Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim9Q8C7M3 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim9Q8C7M3 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Trim9Q8C7M3 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim9Q8C7M3 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim9Q8C7M3 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim9Q8C7M3 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim9Q8C7M3 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Gm22697-201ENSMUST00000175194 63 ntBASIC18.26■□□□□ 0.51
Trim9Q8C7M3 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim9Q8C7M3 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim9Q8C7M3 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Gm27389-201ENSMUST00000183622 195 ntBASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim9Q8C7M3 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim9Q8C7M3 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim9Q8C7M3 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms