Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Gm18959-201ENSMUST00000208954 655 ntBASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sh3rf1Q69ZI1 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Gm21362-201ENSMUST00000194272 928 ntBASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sh3rf1Q69ZI1 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Gm6659-201ENSMUST00000174752 547 ntBASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sh3rf1Q69ZI1 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Sh3rf1Q69ZI1 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Gm7367-201ENSMUST00000057611 492 ntBASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Gm10819-201ENSMUST00000099988 561 ntBASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.76■□□□□ 0.27
Sh3rf1Q69ZI1 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Gm27463-201ENSMUST00000183569 57 ntBASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sh3rf1Q69ZI1 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms