Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3bQ3ULL6 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Upf3bQ3ULL6 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Upf3bQ3ULL6 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3bQ3ULL6 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Gm18421-201ENSMUST00000204122 625 ntBASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3bQ3ULL6 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Haglr-201ENSMUST00000100000 2085 ntBASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Gm9013-201ENSMUST00000132939 882 ntBASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Gm23634-201ENSMUST00000175071 91 ntBASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3bQ3ULL6 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Gm29707-201ENSMUST00000196325 491 ntBASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3bQ3ULL6 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3bQ3ULL6 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms