Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 AC132104.2-201ENSMUST00000215011 266 ntBASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Upf3aQ3ULJ3 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Upf3aQ3ULJ3 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Gm37935-201ENSMUST00000192012 982 ntBASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.36■□□□□ 0.37
Upf3aQ3ULJ3 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3aQ3ULJ3 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Mir5126-201ENSMUST00000175513 77 ntBASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Gm7506-201ENSMUST00000207758 815 ntBASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms