Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col2a1P28481 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col2a1P28481 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Col2a1P28481 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC18.7■□□□□ 0.58
Col2a1P28481 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC18.7■□□□□ 0.58
Col2a1P28481 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.7■□□□□ 0.58
Col2a1P28481 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.7■□□□□ 0.58
Col2a1P28481 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col2a1P28481 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.69■□□□□ 0.58
Col2a1P28481 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Col2a1P28481 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.69■□□□□ 0.58
Col2a1P28481 Gm6089-201ENSMUST00000197666 938 ntBASIC18.69■□□□□ 0.58
Col2a1P28481 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col2a1P28481 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.69■□□□□ 0.58
Col2a1P28481 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col2a1P28481 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Col2a1P28481 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.68■□□□□ 0.58
Col2a1P28481 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.68■□□□□ 0.58
Col2a1P28481 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
Col2a1P28481 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC18.68■□□□□ 0.58
Col2a1P28481 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC18.68■□□□□ 0.58
Col2a1P28481 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
Col2a1P28481 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col2a1P28481 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Col2a1P28481 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Gm8655-201ENSMUST00000221159 852 ntBASIC18.67■□□□□ 0.58
Col2a1P28481 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
Col2a1P28481 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col2a1P28481 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.67■□□□□ 0.58
Col2a1P28481 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col2a1P28481 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Col2a1P28481 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Col2a1P28481 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Col2a1P28481 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col2a1P28481 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col2a1P28481 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.65■□□□□ 0.58
Col2a1P28481 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.65■□□□□ 0.58
Col2a1P28481 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col2a1P28481 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Col2a1P28481 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.65■□□□□ 0.58
Col2a1P28481 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col2a1P28481 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.65■□□□□ 0.58
Col2a1P28481 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Col2a1P28481 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col2a1P28481 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms