Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SMG1P6-201ENST00000532337 2930 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXD3P31249 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 AC114947.2-201ENST00000565748 2125 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXD3P31249 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXD3P31249 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 AC016716.1-201ENST00000265882 708 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXD3P31249 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXD3P31249 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXD3P31249 RN7SKP224-201ENST00000364140 325 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 MIR105-1-201ENST00000385222 81 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC007066.1-201ENST00000392902 381 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 DBIP1-201ENST00000401435 260 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 PPIAP9-201ENST00000403866 498 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 MIR1284-201ENST00000408337 120 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 AL133482.1-201ENST00000415988 498 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 NIPA2P1-201ENST00000426223 976 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 B3GNT2P1-201ENST00000434960 952 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC099670.2-201ENST00000435130 321 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 TMX2P1-201ENST00000436507 708 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 COX6CP2-201ENST00000444980 225 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 RPS27AP15-201ENST00000447672 466 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 RPL7L1P1-201ENST00000448259 785 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 AL389915.2-201ENST00000454576 441 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 SNRPGP9-201ENST00000456025 225 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 NF1P3-201ENST00000457709 450 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC109462.1-201ENST00000491087 368 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC091912.1-201ENST00000511351 248 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC010285.3-201ENST00000511668 676 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC097486.1-201ENST00000515331 210 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC092709.1-201ENST00000521355 1045 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXD3P31249 AP002963.1-201ENST00000530590 184 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 OR6C7P-201ENST00000547875 934 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC025857.2-201ENST00000602711 238 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC069307.1-201ENST00000602820 447 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 TAS2R6P-201ENST00000605022 826 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AC092354.1-201ENST00000606057 376 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 MIR6820-201ENST00000611508 62 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AL590240.3-201ENST00000621416 943 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AL359715.5-201ENST00000623431 443 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 AP002799.1-201ENST00000623552 423 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXD3P31249 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXD3P31249 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXD3P31249 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXD3P31249 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXD3P31249 AP000756.2-201ENST00000624168 2567 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXD3P31249 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 AC023421.1-201ENST00000590535 1785 ntBASIC4.12□□□□□ -1.75
HOXD3P31249 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXD3P31249 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXD3P31249 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC4.11□□□□□ -1.75
HOXD3P31249 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 AL121657.1-201ENST00000327215 531 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 Y_RNA.3-201ENST00000362331 103 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 RNA5SP305-201ENST00000362665 119 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 Y_RNA.302-201ENST00000364997 102 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 SNORA51.12-201ENST00000384448 134 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 RNU6-1151P-201ENST00000384684 107 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 RPL23AP29-201ENST00000397284 453 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms