Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CHD3Q12873 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 Z82195.1-201ENST00000604558 398 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 MIR6715B-201ENST00000637172 77 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CHD3Q12873 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CHD3Q12873 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CHD3Q12873 AP000542.2-201ENST00000623199 6179 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 U8.11-201ENST00000384699 133 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 U8.12-201ENST00000384701 133 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.43□□□□□ -1.86
CHD3Q12873 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.43□□□□□ -1.86
CHD3Q12873 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.43□□□□□ -1.86
CHD3Q12873 RANP8-201ENST00000444720 713 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
CHD3Q12873 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.43□□□□□ -1.86
CHD3Q12873 AL162388.1-201ENST00000450912 352 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 U8.18-201ENST00000459285 133 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.43□□□□□ -1.86
CHD3Q12873 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.43□□□□□ -1.86
CHD3Q12873 SNORA70.24-201ENST00000517233 118 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.43□□□□□ -1.86
CHD3Q12873 PDCD5P1-201ENST00000543528 309 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 MIR3200-201ENST00000580767 85 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 MIR3124-201ENST00000582636 67 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.43□□□□□ -1.86
CHD3Q12873 AL034351.1-201ENST00000605288 668 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 AL354760.1-201ENST00000608357 643 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 AL591424.2-201ENST00000617023 128 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 TNPO1P3-201ENST00000436471 2662 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CHD3Q12873 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.42□□□□□ -1.86
CHD3Q12873 AL079305.1-201ENST00000623159 3008 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
CHD3Q12873 AC090971.4-201ENST00000560291 1800 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CHD3Q12873 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
CHD3Q12873 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.42□□□□□ -1.86
CHD3Q12873 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CHD3Q12873 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.42□□□□□ -1.86
CHD3Q12873 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.42□□□□□ -1.86
CHD3Q12873 HLA-N-201ENST00000437516 135 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 CYCSP32-201ENST00000440548 321 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.42□□□□□ -1.86
CHD3Q12873 RPL23AP12-201ENST00000467573 473 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CHD3Q12873 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.42□□□□□ -1.86
CHD3Q12873 RN7SKP83-201ENST00000516512 178 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 AC068020.1-201ENST00000594215 661 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.42□□□□□ -1.86
CHD3Q12873 AC016957.2-201ENST00000616998 848 ntBASIC3.42□□□□□ -1.86
CHD3Q12873 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CHD3Q12873 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
CHD3Q12873 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CHD3Q12873 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CHD3Q12873 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.41□□□□□ -1.86
CHD3Q12873 RN7SKP177-201ENST00000410567 355 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.41□□□□□ -1.86
CHD3Q12873 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.41□□□□□ -1.86
CHD3Q12873 FCF1P7-201ENST00000451185 558 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 ACTR3P3-201ENST00000480448 893 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 SOD1P3-201ENST00000518682 454 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.41□□□□□ -1.86
CHD3Q12873 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.41□□□□□ -1.86
CHD3Q12873 CYP4A43P-201ENST00000568156 121 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.41□□□□□ -1.86
CHD3Q12873 AC141257.3-201ENST00000572906 215 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.41□□□□□ -1.86
CHD3Q12873 MIR432-201ENST00000606207 94 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC3.41□□□□□ -1.86
CHD3Q12873 AC024560.2-201ENST00000507981 1497 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CHD3Q12873 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.41□□□□□ -1.86
CHD3Q12873 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CHD3Q12873 CASC19-261ENST00000641853 1638 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CHD3Q12873 RNU6-1279P-201ENST00000383917 103 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 RNU6-178P-201ENST00000384631 104 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 RNU2-65P-201ENST00000410162 185 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 TCEA1P4-201ENST00000415066 844 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.41□□□□□ -1.86
CHD3Q12873 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.41□□□□□ -1.86
CHD3Q12873 AL357520.1-201ENST00000441557 453 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 FTH1P25-201ENST00000447665 469 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AC008155.2-201ENST00000464337 397 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.41□□□□□ -1.86
CHD3Q12873 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
CHD3Q12873 HNRNPKP5-201ENST00000515300 253 ntBASIC3.41□□□□□ -1.86
CHD3Q12873 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.41□□□□□ -1.86
CHD3Q12873 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.41□□□□□ -1.86
CHD3Q12873 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms