Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ARL4AP1-201ENST00000503220 705 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.78□□□□□ -1.64
PTPN9P43378 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.78□□□□□ -1.64
PTPN9P43378 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.78□□□□□ -1.64
PTPN9P43378 AC092593.2-201ENST00000513866 913 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.78□□□□□ -1.64
PTPN9P43378 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.78□□□□□ -1.64
PTPN9P43378 MTATP6P15-201ENST00000527233 835 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.78□□□□□ -1.64
PTPN9P43378 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.78□□□□□ -1.64
PTPN9P43378 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.78□□□□□ -1.64
PTPN9P43378 MTND3P13-201ENST00000574391 343 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AC091178.1-203ENST00000584586 279 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 Mico1.1-201ENST00000611698 204 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AL592148.2-201ENST00000612210 372 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AL353726.1-201ENST00000614041 1000 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.78□□□□□ -1.64
PTPN9P43378 AL355493.4-201ENST00000618530 292 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AC140113.4-201ENST00000622087 222 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 AC087821.2-201ENST00000637086 450 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 AP001273.1-201ENST00000624493 3152 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 AC000367.1-201ENST00000452711 1766 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTPN9P43378 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.78□□□□□ -1.64
PTPN9P43378 AC108467.2-201ENST00000617640 1597 ntBASIC4.78□□□□□ -1.64
PTPN9P43378 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
PTPN9P43378 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
PTPN9P43378 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.78□□□□□ -1.65
PTPN9P43378 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 ASNSP1-204ENST00000641977 1664 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 DDX18P3-201ENST00000404856 2007 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 A2MP1-204ENST00000566278 4130 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PTPN9P43378 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 SNORA70F-201ENST00000384142 135 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 MIR16-1-201ENST00000385271 89 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 RN7SKP106-201ENST00000410832 272 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.77□□□□□ -1.65
PTPN9P43378 GSTM3P2-201ENST00000412746 530 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.77□□□□□ -1.65
PTPN9P43378 CYCSP10-201ENST00000417973 294 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AC004690.1-201ENST00000418216 328 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AC114814.2-201ENST00000419195 485 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AC005005.2-201ENST00000420779 380 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 RAD23BP1-201ENST00000421404 1227 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.77□□□□□ -1.65
PTPN9P43378 PPIAP13-201ENST00000434706 478 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC099063.2-201ENST00000446360 662 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AC005410.1-202ENST00000460347 485 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 GAPDHP39-201ENST00000481866 979 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 RNU6-416P-201ENST00000516265 103 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AF186190.1-201ENST00000517470 480 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.77□□□□□ -1.65
PTPN9P43378 VN1R83P-201ENST00000595685 445 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 RPL7P50-201ENST00000600588 727 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AC107952.2-201ENST00000606048 486 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AP000238.1-201ENST00000608759 426 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AC243654.2-201ENST00000612843 443 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC018926.3-201ENST00000618841 406 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
PTPN9P43378 AC005086.4-201ENST00000623065 213 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 AP002791.1-201ENST00000623291 381 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 MFSD8-245ENST00000641743 948 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
PTPN9P43378 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
PTPN9P43378 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
PTPN9P43378 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 AC025263.3-201ENST00000622965 1396 ntBASIC4.77□□□□□ -1.65
PTPN9P43378 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
PTPN9P43378 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTPN9P43378 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTPN9P43378 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTPN9P43378 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTPN9P43378 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTPN9P43378 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTPN9P43378 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.76□□□□□ -1.65
PTPN9P43378 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
PTPN9P43378 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms