Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC010587.2-201ENST00000511727 448 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A1P12109 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC012400.1-201ENST00000518452 381 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC5.82□□□□□ -1.48
COL6A1P12109 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.82□□□□□ -1.48
COL6A1P12109 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC027104.1-201ENST00000563702 681 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 MTCO1P40-201ENST00000574371 625 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC009220.3-201ENST00000604318 586 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
COL6A1P12109 AL391358.1-201ENST00000605342 190 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC006270.3-201ENST00000605967 1036 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AL451074.6-201ENST00000608512 729 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC010678.1-201ENST00000614118 713 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 MIR7973-1-201ENST00000614683 76 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC024595.1-201ENST00000623088 387 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL6A1P12109 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A1P12109 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A1P12109 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A1P12109 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A1P12109 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 AP005901.5-201ENST00000545779 1796 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 AC011155.1-201ENST00000316512 456 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
COL6A1P12109 ATP5F1P4-201ENST00000397288 746 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 ZNF603P-201ENST00000405613 487 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 RPS15AP38-201ENST00000413110 372 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AL161449.1-201ENST00000414531 1199 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC5.81□□□□□ -1.48
COL6A1P12109 Z99497.1-201ENST00000421282 135 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 EIF1P1-201ENST00000421436 341 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 GTF2IP23-201ENST00000423746 351 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A1P12109 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.81□□□□□ -1.48
COL6A1P12109 AL359265.2-201ENST00000434367 631 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 PPIAP13-201ENST00000434706 478 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 AC112498.1-201ENST00000444401 332 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 AL359385.1-201ENST00000456509 365 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC006511.1-201ENST00000470614 315 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 AC109445.1-201ENST00000512356 383 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AL110118.1-201ENST00000553543 400 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 AC044913.1-201ENST00000557200 430 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A1P12109 MIR3667-201ENST00000581025 74 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.81□□□□□ -1.48
COL6A1P12109 MIR4719-201ENST00000585233 84 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
COL6A1P12109 AP000403.1-201ENST00000603349 851 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC020910.2-201ENST00000603635 610 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC010200.2-201ENST00000605098 235 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AL592221.1-201ENST00000605266 382 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 AC026368.1-201ENST00000614934 690 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 AC008083.4-201ENST00000615076 444 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC095031.1-201ENST00000623685 672 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC135068.12-201ENST00000637370 931 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC073869.8-201ENST00000641806 335 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.81□□□□□ -1.48
COL6A1P12109 SEC63P2-201ENST00000503863 1939 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.81□□□□□ -1.48
COL6A1P12109 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 GTF2H2B-203ENST00000508065 1432 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 AC004520.1-201ENST00000608362 1413 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 CASC19-206ENST00000641028 1430 ntBASIC5.81□□□□□ -1.48
COL6A1P12109 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL6A1P12109 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.81□□□□□ -1.48
COL6A1P12109 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
COL6A1P12109 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COL6A1P12109 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL6A1P12109 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms