Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC011477.1-204ENST00000623416 1325 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AL512646.1-201ENST00000269395 1077 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS4BO75351 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4BO75351 RNU1-74P-201ENST00000384108 171 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 MIR141-201ENST00000384975 95 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 RNU6-1300P-201ENST00000391046 108 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 OR8V1P-201ENST00000395193 873 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 RPL35AP21-201ENST00000437667 333 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 NPM1P33-201ENST00000438918 872 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC009220.1-201ENST00000451614 275 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 RPL7P1-201ENST00000468161 747 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 RPL7P9-201ENST00000468715 747 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC083982.1-201ENST00000485679 344 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 ARL4AP1-201ENST00000503220 705 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 SNRPCP2-201ENST00000504370 475 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.08□□□□□ -1.6
VPS4BO75351 RNU6-678P-201ENST00000516832 109 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC105031.1-201ENST00000518550 476 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 NDUFA5P2-201ENST00000519723 344 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS4BO75351 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 GTF2IP8-201ENST00000560687 584 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC018552.1-201ENST00000562099 811 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 MIR3934-201ENST00000579806 107 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC006116.3-201ENST00000592968 361 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 WISP1-OT1-201ENST00000602893 642 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AC073114.1-201ENST00000612027 490 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AL158063.1-201ENST00000615349 536 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS4BO75351 AL136981.2-201ENST00000617319 734 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 AL607023.1-201ENST00000620045 248 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4BO75351 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC015726.3-201ENST00000624501 418 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC011493.1-201ENST00000596753 1632 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS4BO75351 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS4BO75351 AC022031.1-201ENST00000585985 2593 ntBASIC5.08□□□□□ -1.6
VPS4BO75351 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
VPS4BO75351 AL450345.1-202ENST00000605741 3881 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC096656.1-201ENST00000623826 1364 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS4BO75351 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 AP000542.2-201ENST00000623199 6179 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 AC027228.2-201ENST00000567141 2154 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 SUGT1P1-201ENST00000379514 476 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 SNORA16A-201ENST00000384342 137 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 Y_RNA.560-201ENST00000384689 102 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 TMSB4XP8-201ENST00000402089 135 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 TMSB4XP6-201ENST00000415187 135 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 NPM1P11-201ENST00000417106 855 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 TMSB4XP1-201ENST00000424567 135 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 DYNLL1P7-201ENST00000429273 258 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 VDAC1P6-201ENST00000430062 855 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AL590103.1-201ENST00000434488 307 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AL353706.1-201ENST00000436728 494 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 AL138878.2-201ENST00000440581 1241 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS4BO75351 TPTE2P6-202ENST00000445572 1007 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 RPS27AP15-201ENST00000447672 466 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 RPL12P26-201ENST00000452430 487 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC002553.2-201ENST00000453217 340 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VPS4BO75351 AC008885.2-201ENST00000509506 930 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 AC010285.3-201ENST00000511668 676 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC008494.2-201ENST00000514544 370 ntBASIC5.07□□□□□ -1.6
VPS4BO75351 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.07□□□□□ -1.6
VPS4BO75351 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS4BO75351 BNIP3P1-201ENST00000547295 580 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms