Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.82□□□□□ -1.8
HMGA1P17096 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGA1P17096 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGA1P17096 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGA1P17096 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HMGA1P17096 UBA52P3-201ENST00000491303 382 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.82□□□□□ -1.8
HMGA1P17096 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.82□□□□□ -1.8
HMGA1P17096 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.82□□□□□ -1.8
HMGA1P17096 AC007458.1-201ENST00000542812 373 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGA1P17096 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGA1P17096 RN7SL339P-201ENST00000580597 296 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 AC005412.1-201ENST00000580812 1049 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 SRGNP1-201ENST00000603392 451 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 AL163642.2-201ENST00000604722 1019 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 MIR7975-201ENST00000619350 68 ntBASIC3.82□□□□□ -1.8
HMGA1P17096 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.82□□□□□ -1.8
HMGA1P17096 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HMGA1P17096 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HMGA1P17096 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HMGA1P17096 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HMGA1P17096 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HMGA1P17096 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
HMGA1P17096 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.81□□□□□ -1.8
HMGA1P17096 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 AL365440.1-201ENST00000436135 2167 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 JKAMPP1-201ENST00000413804 919 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGA1P17096 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGA1P17096 AC092641.1-201ENST00000440229 772 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC3.81□□□□□ -1.8
HMGA1P17096 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.81□□□□□ -1.8
HMGA1P17096 RPL23AP12-201ENST00000467573 473 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 HNRNPKP5-201ENST00000515300 253 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 SNORA70.18-201ENST00000516696 98 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.81□□□□□ -1.8
HMGA1P17096 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC3.81□□□□□ -1.8
HMGA1P17096 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 AC007179.3-201ENST00000604976 235 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 AC068254.2-201ENST00000623938 3577 ntBASIC3.81□□□□□ -1.8
HMGA1P17096 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HMGA1P17096 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.81□□□□□ -1.8
HMGA1P17096 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HMGA1P17096 MTCO1P12-201ENST00000414273 1543 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC090337.1-201ENST00000579651 2074 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HMGA1P17096 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.8□□□□□ -1.8
HMGA1P17096 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HMGA1P17096 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HMGA1P17096 LINC01355-201ENST00000566551 5444 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 Y_RNA.333-201ENST00000365274 102 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 MIR490-201ENST00000384865 128 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 MIR34B-201ENST00000385076 84 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 DPY19L1P2-201ENST00000426647 915 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 AC073063.1-201ENST00000434352 607 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 NDUFB1P1-201ENST00000435191 180 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 RBMY2UP-201ENST00000453474 324 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 RPS26P15-201ENST00000488067 348 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.8□□□□□ -1.8
HMGA1P17096 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.8□□□□□ -1.8
HMGA1P17096 SNORA70.17-201ENST00000516449 133 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.8□□□□□ -1.8
HMGA1P17096 AL121766.1-201ENST00000547436 487 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC233309.1-201ENST00000619522 751 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HMGA1P17096 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.8□□□□□ -1.8
HMGA1P17096 PRO1804-201ENST00000623780 2050 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 BDP1P-201ENST00000582658 1990 ntBASIC3.8□□□□□ -1.8
HMGA1P17096 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.8□□□□□ -1.8
HMGA1P17096 AC074029.4-201ENST00000624796 1859 ntBASIC3.79□□□□□ -1.8
HMGA1P17096 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HMGA1P17096 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HMGA1P17096 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC3.79□□□□□ -1.8
HMGA1P17096 PTMAP5-201ENST00000393073 333 ntBASIC3.79□□□□□ -1.8
HMGA1P17096 DBIP2-201ENST00000419076 262 ntBASIC3.79□□□□□ -1.8
HMGA1P17096 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.79□□□□□ -1.8
HMGA1P17096 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.79□□□□□ -1.8
HMGA1P17096 PPIAP3-201ENST00000450588 505 ntBASIC3.79□□□□□ -1.8
HMGA1P17096 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms