Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.5□□□□□ -1.53
COL3A1P02461 AL161637.1-201ENST00000622380 412 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 OR8B1P-202ENST00000641132 1178 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.5□□□□□ -1.53
COL3A1P02461 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL3A1P02461 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 TCP1P3-201ENST00000414406 1498 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 AC021755.1-201ENST00000559747 1447 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 MTND4P26-201ENST00000415971 1359 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AL929601.4-201ENST00000613011 1341 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.49□□□□□ -1.53
COL3A1P02461 IL6STP1-201ENST00000346911 1020 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 RNU5E-10P-201ENST00000363506 118 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 RN7SKP280-201ENST00000364196 304 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 MIR23B-201ENST00000384832 97 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AC119751.3-201ENST00000399720 670 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 HSPE1P12-201ENST00000412576 301 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 AC009237.10-201ENST00000414112 510 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 AC090960.1-201ENST00000421072 306 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AC013262.1-201ENST00000426710 252 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 RPS4XP4-201ENST00000443195 763 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.49□□□□□ -1.53
COL3A1P02461 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 MTCO3P16-201ENST00000454456 754 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 RPS7P7-201ENST00000463499 571 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 BET1P1-201ENST00000482276 359 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC5.49□□□□□ -1.53
COL3A1P02461 AC025554.1-201ENST00000505641 188 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC5.49□□□□□ -1.53
COL3A1P02461 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 AC134698.4-201ENST00000523451 826 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC5.49□□□□□ -1.53
COL3A1P02461 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 QTRT1P1-201ENST00000604344 1078 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 AC015922.4-201ENST00000612568 690 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
COL3A1P02461 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.49□□□□□ -1.53
COL3A1P02461 USP9YP4-201ENST00000424401 1745 ntBASIC5.49□□□□□ -1.53
COL3A1P02461 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.49□□□□□ -1.53
COL3A1P02461 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL3A1P02461 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.48□□□□□ -1.53
COL3A1P02461 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
COL3A1P02461 AC025263.3-201ENST00000622965 1396 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL3A1P02461 Y_RNA.436-201ENST00000384097 102 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 Y_RNA.599-201ENST00000410489 109 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC5.48□□□□□ -1.53
COL3A1P02461 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 PDSS1P1-201ENST00000422953 1114 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 RBMY1KP-201ENST00000423480 476 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.48□□□□□ -1.53
COL3A1P02461 AL691449.1-201ENST00000426570 421 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 HIGD1AP4-201ENST00000430194 280 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.48□□□□□ -1.53
COL3A1P02461 AL117339.2-201ENST00000430475 180 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5.48□□□□□ -1.53
COL3A1P02461 MTND4P25-201ENST00000441039 533 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC5.48□□□□□ -1.53
COL3A1P02461 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC5.48□□□□□ -1.53
COL3A1P02461 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.48□□□□□ -1.53
COL3A1P02461 RPS11P1-201ENST00000451072 473 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 VN1R105P-201ENST00000486595 910 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 IFITM8P-201ENST00000522529 394 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
COL3A1P02461 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.48□□□□□ -1.53
COL3A1P02461 AL158042.1-201ENST00000605338 460 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AC018638.7-201ENST00000605836 1114 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AL450270.1-201ENST00000606160 391 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.48□□□□□ -1.53
COL3A1P02461 AL121890.2-201ENST00000617644 465 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 AC078880.5-201ENST00000617845 421 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL3A1P02461 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 VPS35P1-201ENST00000563400 1518 ntBASIC5.48□□□□□ -1.53
COL3A1P02461 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL3A1P02461 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 RNU1-85P-201ENST00000364127 164 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 ZNF602P-201ENST00000405929 924 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 MIR1302-8-201ENST00000408342 128 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms