Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXC9P31274 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXC9P31274 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXC9P31274 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
HOXC9P31274 Z95327.2-201ENST00000414579 1873 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 RNA5SP387-201ENST00000364226 106 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 U1.1-201ENST00000384101 164 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXC9P31274 MORF4L1P7-201ENST00000426038 703 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXC9P31274 AC091286.1-201ENST00000431233 461 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 AL138787.1-202ENST00000437804 898 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXC9P31274 FABP3P2-201ENST00000453169 399 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXC9P31274 PPIAP15-201ENST00000479662 484 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 LARP7P4-201ENST00000481075 878 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXC9P31274 RNU1-95P-201ENST00000516357 160 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 RNU1-128P-201ENST00000516704 160 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXC9P31274 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXC9P31274 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXC9P31274 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXC9P31274 AC113192.3-201ENST00000529152 742 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 MTCO3P22-201ENST00000603219 784 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 AC004775.1-201ENST00000607389 753 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 AL451049.1-201ENST00000608672 497 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 AL356121.2-201ENST00000624715 780 ntBASIC5.3□□□□□ -1.56
HOXC9P31274 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HOXC9P31274 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXC9P31274 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXC9P31274 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXC9P31274 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 AL136520.1-201ENST00000600311 1322 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 SNORA5A-201ENST00000384111 134 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 RNA5SP372-201ENST00000390836 115 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 SYF2P2-201ENST00000417620 583 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXC9P31274 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXC9P31274 PSMC1P13-201ENST00000458195 985 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXC9P31274 AC092902.1-201ENST00000486999 259 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 SNORA76.2-201ENST00000517095 137 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
HOXC9P31274 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXC9P31274 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXC9P31274 AC124068.1-201ENST00000563131 678 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC233266.2-201ENST00000567067 528 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC022968.1-201ENST00000567372 442 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXC9P31274 MIR3936-201ENST00000584304 110 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AP004372.1-201ENST00000604842 844 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC096553.1-201ENST00000605169 829 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC120053.1-201ENST00000607706 736 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC023509.5-201ENST00000617434 807 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AL163051.2-201ENST00000618976 735 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 AC138965.3-201ENST00000623875 498 ntBASIC5.29□□□□□ -1.56
HOXC9P31274 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.29□□□□□ -1.56
HOXC9P31274 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
HOXC9P31274 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
HOXC9P31274 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXC9P31274 AL031595.2-201ENST00000624215 19071 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXC9P31274 AL627171.1-201ENST00000618845 1308 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
HOXC9P31274 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
HOXC9P31274 MARK2P15-201ENST00000432204 2186 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 SNORD46.1-201ENST00000364139 104 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 GCNT6-201ENST00000379591 934 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 MIR23A-201ENST00000385245 73 ntBASIC5.28□□□□□ -1.56
HOXC9P31274 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HOXC9P31274 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXC9P31274 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms