Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC010300.1-201ENST00000600671 5134 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 RNU1-14P-201ENST00000362759 152 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 RNU6-317P-201ENST00000384031 107 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 MIR3074-201ENST00000384885 81 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL583835.1-201ENST00000399570 407 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 RPL31P52-201ENST00000407532 367 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 GSTM3P2-201ENST00000412746 530 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 LINC01881-201ENST00000416103 412 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 CYP4F29P-201ENST00000420685 446 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 SEC63P1-201ENST00000425785 1258 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC073069.1-201ENST00000428657 441 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 NANOGP6-201ENST00000429190 847 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 RPS24P8-201ENST00000431490 402 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 MED6P1-201ENST00000439659 713 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 MTND2P25-201ENST00000449028 610 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 RPL7P22-201ENST00000466005 733 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 RPS23P7-201ENST00000466210 444 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC006511.1-201ENST00000470614 315 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC091167.1-201ENST00000492017 396 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC104164.2-201ENST00000496953 495 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC106806.2-201ENST00000509365 500 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC008958.1-201ENST00000511047 682 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC008694.2-201ENST00000517591 306 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC004923.2-201ENST00000529649 369 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC069240.1-201ENST00000548774 375 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC084757.1-201ENST00000559987 490 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 MIR4716-201ENST00000579628 84 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL445423.1-201ENST00000609941 536 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 MIR378J-201ENST00000611988 109 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC004825.2-201ENST00000616634 455 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL645927.2-201ENST00000618350 349 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 MIR7154-201ENST00000620673 73 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL356490.1-201ENST00000623079 479 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AP000843.1-201ENST00000624880 701 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 MIR3653-201ENST00000625572 110 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 Z73965.1-201ENST00000623412 2297 ntBASIC4.25□□□□□ -1.73
VPS35Q96QK1 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS35Q96QK1 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS35Q96QK1 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 GTF2H2B-203ENST00000508065 1432 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC009951.1-201ENST00000623674 2614 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS35Q96QK1 SNORD66.1-201ENST00000391230 76 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 OR6C69P-201ENST00000394268 893 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 RN7SKP235-201ENST00000410662 305 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 RPL23AP26-201ENST00000412728 464 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 NRBF2P2-201ENST00000413087 861 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 MFSD13B-201ENST00000420133 1290 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC073335.1-201ENST00000427776 363 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AL691517.1-201ENST00000440833 1235 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 NDUFS5P3-201ENST00000450668 321 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 IFNWP4-201ENST00000453148 294 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AL133477.1-201ENST00000457472 514 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 CABYRP1-201ENST00000465493 1045 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC109327.1-201ENST00000471666 403 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 MTND6P6-201ENST00000478031 263 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC041039.1-201ENST00000485656 536 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 HPRT1P1-201ENST00000509498 657 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS35Q96QK1 RNA5SP49-201ENST00000516450 115 ntBASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS35Q96QK1 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms