Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC068647.1-201ENST00000489539 2265 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 DCAF13P3-201ENST00000561147 1334 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 HMGB3P19-201ENST00000403971 560 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 RN7SKP156-201ENST00000410308 342 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 OR52N3P-201ENST00000413417 934 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC068533.1-201ENST00000418542 415 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 OR1AA1P-201ENST00000419597 916 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC006960.1-201ENST00000419980 153 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AL390866.1-201ENST00000425137 469 ntTSL 5 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 KRT18P53-201ENST00000431919 117 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 HIGD1AP11-201ENST00000438361 280 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 RNF148-202ENST00000447240 839 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AL162591.2-201ENST00000449634 317 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 RPL7P1-201ENST00000468161 747 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 RPL7P9-201ENST00000468715 747 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC105233.1-201ENST00000498840 781 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC091874.2-201ENST00000505889 720 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 GAPDHP56-201ENST00000506031 988 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC118282.1-201ENST00000506408 765 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC147055.1-201ENST00000509261 750 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC119751.1-201ENST00000513357 765 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 MTCO3P24-201ENST00000572729 782 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 MIR6721-201ENST00000617181 87 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC022149.2-201ENST00000621061 203 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AP003400.2-201ENST00000624036 666 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 5S_rRNA.29-201ENST00000641250 107 ntBASIC2.29□□□□□ -2.04
LINC00643Q86TS7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 OR4K17-201ENST00000315543 1032 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 RPL7P26-201ENST00000333817 754 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 RNA5SP42-201ENST00000364278 115 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL691447.1-201ENST00000419456 387 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL139281.1-201ENST00000422120 335 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 OR2AS1P-201ENST00000427827 319 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 RPS27AP12-201ENST00000429552 465 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 SNORA71B-202ENST00000439232 272 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 RANP8-201ENST00000444720 713 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 EEF1B2P5-201ENST00000444820 548 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC006480.1-201ENST00000449887 378 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 RPS27AP1-201ENST00000475545 471 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 F11-205ENST00000492972 1204 ntTSL 2 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC023141.12-201ENST00000512399 199 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 BX510359.5-201ENST00000515651 304 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 RNU2-27P-201ENST00000516185 142 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC131935.1-201ENST00000524621 333 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 HAUS8P1-201ENST00000549005 542 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC068714.1-201ENST00000559623 800 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC004241.3-201ENST00000611728 517 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL512624.1-201ENST00000613638 469 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms