Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MT-RNR1-201ENST00000389680 954 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 AL391417.1-201ENST00000404100 426 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 RNA5SP317-201ENST00000410176 116 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 RNA5SP311-201ENST00000411290 116 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.65□□□□□ -1.83
FOXA1P55317 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA1P55317 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.65□□□□□ -1.83
FOXA1P55317 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 AL162388.1-201ENST00000450912 352 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 AC026979.1-201ENST00000492525 396 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 FTH1P21-201ENST00000512179 511 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 RNA5SP315-201ENST00000516340 116 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 SCARNA14-201ENST00000516903 136 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 RNA5SP312-201ENST00000517068 116 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.65□□□□□ -1.83
FOXA1P55317 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA1P55317 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 AC120057.2-201ENST00000571520 271 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.65□□□□□ -1.83
FOXA1P55317 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.65□□□□□ -1.83
FOXA1P55317 MIR6716-201ENST00000613413 80 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 AC009229.4-201ENST00000623854 1947 ntBASIC3.65□□□□□ -1.83
FOXA1P55317 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.65□□□□□ -1.83
FOXA1P55317 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.65□□□□□ -1.83
FOXA1P55317 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.65□□□□□ -1.83
FOXA1P55317 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
FOXA1P55317 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 CASC19-284ENST00000642142 1868 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
FOXA1P55317 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 FAM91A3P-201ENST00000456826 2544 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 MIR372-201ENST00000362225 67 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA1P55317 RCC2P2-201ENST00000422174 918 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 HIGD1AP12-201ENST00000427832 281 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXA1P55317 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA1P55317 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA1P55317 MTCO3P16-201ENST00000454456 754 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 MTCO3P20-201ENST00000454926 688 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA1P55317 RPS7P7-201ENST00000463499 571 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.64□□□□□ -1.83
FOXA1P55317 IGLVIV-53-201ENST00000520107 367 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
FOXA1P55317 MIR4675-201ENST00000577898 77 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXA1P55317 MIR6830-201ENST00000636015 70 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AF001550.2-201ENST00000636643 217 ntBASIC3.64□□□□□ -1.83
FOXA1P55317 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.64□□□□□ -1.83
FOXA1P55317 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
FOXA1P55317 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.64□□□□□ -1.83
FOXA1P55317 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.64□□□□□ -1.83
FOXA1P55317 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
FOXA1P55317 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
FOXA1P55317 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA1P55317 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA1P55317 AL356317.1-201ENST00000396110 1436 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AL356489.2-201ENST00000566968 3528 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 RNA5SP97-201ENST00000365006 84 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 U1.1-201ENST00000384101 164 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA1P55317 RPS26P8-201ENST00000393490 348 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AL589994.1-201ENST00000404962 340 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA1P55317 RAC1P3-201ENST00000416129 580 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA1P55317 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA1P55317 AL357520.1-201ENST00000441557 453 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA1P55317 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA1P55317 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA1P55317 AC108064.1-201ENST00000513791 460 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA1P55317 RNU6-943P-201ENST00000516960 98 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA1P55317 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA1P55317 AC008489.1-201ENST00000524271 483 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA1P55317 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.63□□□□□ -1.83
FOXA1P55317 AC234775.3-201ENST00000564612 656 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA1P55317 AL354760.1-201ENST00000608357 643 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 AC006946.3-201ENST00000609791 756 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
FOXA1P55317 AP002967.1-201ENST00000624203 539 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms