Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.66□□□□□ -1.82
USF1P22415 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USF1P22415 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC3.66□□□□□ -1.82
USF1P22415 MIMT1-201ENST00000597105 1050 ntBASIC3.66□□□□□ -1.82
USF1P22415 AC015813.4-201ENST00000610469 179 ntBASIC3.66□□□□□ -1.82
USF1P22415 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USF1P22415 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.66□□□□□ -1.82
USF1P22415 AC123768.4-201ENST00000616244 701 ntBASIC3.66□□□□□ -1.82
USF1P22415 AC004825.2-201ENST00000616634 455 ntBASIC3.66□□□□□ -1.82
USF1P22415 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.66□□□□□ -1.82
USF1P22415 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USF1P22415 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.66□□□□□ -1.82
USF1P22415 AC011266.1-201ENST00000624119 3569 ntBASIC3.66□□□□□ -1.82
USF1P22415 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USF1P22415 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USF1P22415 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
USF1P22415 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.66□□□□□ -1.82
USF1P22415 AC093311.1-201ENST00000506586 2021 ntBASIC3.66□□□□□ -1.82
USF1P22415 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.66□□□□□ -1.82
USF1P22415 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
USF1P22415 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.66□□□□□ -1.82
USF1P22415 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.66□□□□□ -1.82
USF1P22415 OR11H5P-202ENST00000641612 1325 ntBASIC3.66□□□□□ -1.82
USF1P22415 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.66□□□□□ -1.82
USF1P22415 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
USF1P22415 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
USF1P22415 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
USF1P22415 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
USF1P22415 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.65□□□□□ -1.82
USF1P22415 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.65□□□□□ -1.82
USF1P22415 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.65□□□□□ -1.82
USF1P22415 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.65□□□□□ -1.82
USF1P22415 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
USF1P22415 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USF1P22415 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
USF1P22415 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
USF1P22415 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USF1P22415 RNA5SP22-201ENST00000365393 109 ntBASIC3.65□□□□□ -1.83
USF1P22415 AL359837.1-201ENST00000381357 287 ntBASIC3.65□□□□□ -1.83
USF1P22415 RNU1-44P-201ENST00000384453 163 ntBASIC3.65□□□□□ -1.83
USF1P22415 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
USF1P22415 RPS27AP11-201ENST00000402798 447 ntBASIC3.65□□□□□ -1.83
USF1P22415 GSTM3P2-201ENST00000412746 530 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.65□□□□□ -1.83
USF1P22415 AC004552.1-201ENST00000419089 348 ntBASIC3.65□□□□□ -1.83
USF1P22415 MTCO1P57-201ENST00000432182 261 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 RPL23AP52-201ENST00000439311 478 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC114495.1-201ENST00000441274 436 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC245517.2-201ENST00000442890 346 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.65□□□□□ -1.83
USF1P22415 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.65□□□□□ -1.83
USF1P22415 AP002345.1-201ENST00000456493 928 ntBASIC3.65□□□□□ -1.83
USF1P22415 RPS26P3-201ENST00000470205 348 ntBASIC3.65□□□□□ -1.83
USF1P22415 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 AC090543.2-201ENST00000483963 348 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC004057.1-201ENST00000485827 348 ntBASIC3.65□□□□□ -1.83
USF1P22415 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.65□□□□□ -1.83
USF1P22415 AC008958.1-201ENST00000511047 682 ntBASIC3.65□□□□□ -1.83
USF1P22415 HMGB1P47-201ENST00000511281 589 ntBASIC3.65□□□□□ -1.83
USF1P22415 RNU6-1004P-201ENST00000516584 111 ntBASIC3.65□□□□□ -1.83
USF1P22415 RNU6-551P-201ENST00000516661 103 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC3.65□□□□□ -1.83
USF1P22415 AC243654.2-201ENST00000612843 443 ntBASIC3.65□□□□□ -1.83
USF1P22415 AL392048.1-201ENST00000613946 534 ntBASIC3.65□□□□□ -1.83
USF1P22415 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.65□□□□□ -1.83
USF1P22415 AC008785.1-201ENST00000624475 456 ntBASIC3.65□□□□□ -1.83
USF1P22415 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.65□□□□□ -1.83
USF1P22415 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USF1P22415 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.65□□□□□ -1.83
USF1P22415 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.65□□□□□ -1.83
USF1P22415 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
USF1P22415 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
USF1P22415 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
USF1P22415 USP9YP4-201ENST00000424401 1745 ntBASIC3.64□□□□□ -1.83
USF1P22415 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.64□□□□□ -1.83
USF1P22415 NXPH1-205ENST00000602349 1953 ntBASIC3.64□□□□□ -1.83
USF1P22415 AC022893.2-201ENST00000564832 3296 ntBASIC3.64□□□□□ -1.83
USF1P22415 RNU1-63P-201ENST00000383902 164 ntBASIC3.64□□□□□ -1.83
USF1P22415 AL078604.1-201ENST00000404609 466 ntBASIC3.64□□□□□ -1.83
USF1P22415 PPIAP31-201ENST00000405422 495 ntBASIC3.64□□□□□ -1.83
USF1P22415 RPL31P52-201ENST00000407532 367 ntBASIC3.64□□□□□ -1.83
USF1P22415 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.64□□□□□ -1.83
USF1P22415 COX6CP15-201ENST00000426313 211 ntBASIC3.64□□□□□ -1.83
USF1P22415 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.64□□□□□ -1.83
USF1P22415 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC3.64□□□□□ -1.83
USF1P22415 AL512326.1-201ENST00000443050 721 ntBASIC3.64□□□□□ -1.83
USF1P22415 RPS27AP15-201ENST00000447672 466 ntBASIC3.64□□□□□ -1.83
USF1P22415 HMGB3P21-201ENST00000452483 547 ntBASIC3.64□□□□□ -1.83
USF1P22415 RPL7P48-201ENST00000461513 746 ntBASIC3.64□□□□□ -1.83
USF1P22415 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.64□□□□□ -1.83
USF1P22415 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.64□□□□□ -1.83
USF1P22415 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.64□□□□□ -1.83
USF1P22415 AC090013.1-201ENST00000485147 480 ntBASIC3.64□□□□□ -1.83
USF1P22415 AL132838.2-201ENST00000492041 314 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms