Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 MIR2114-201ENST00000516645 80 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 OR8G5-201ENST00000524943 1041 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 NPM1P47-201ENST00000560843 856 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL360157.1-201ENST00000565962 87 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC233266.2-201ENST00000567067 528 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 RPL23AP97-201ENST00000568955 471 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC005191.1-201ENST00000603950 358 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 RPL21P136-201ENST00000605378 396 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC090948.1-201ENST00000607464 549 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC110792.4-201ENST00000609843 298 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC011472.4-201ENST00000615848 491 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AP004607.9-201ENST00000618202 316 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL645927.2-201ENST00000618350 349 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL035461.2-201ENST00000619201 524 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC090617.9-201ENST00000623751 147 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SKA3Q8IX90 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SKA3Q8IX90 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.84□□□□□ -1.8
SKA3Q8IX90 CCT8P1-201ENST00000413611 1657 ntBASIC3.84□□□□□ -1.8
SKA3Q8IX90 AC090017.1-201ENST00000548612 1779 ntBASIC3.84□□□□□ -1.8
SKA3Q8IX90 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
SKA3Q8IX90 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
SKA3Q8IX90 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
SKA3Q8IX90 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 LINC02471-203ENST00000641941 4752 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 IGKV7-3-201ENST00000357453 298 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 U3.22-201ENST00000391120 215 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 TAF9BP2-201ENST00000400856 499 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 ELOCP19-201ENST00000411919 318 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC009480.2-201ENST00000422916 432 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC093698.1-201ENST00000423843 571 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 GSTA7P-201ENST00000438425 448 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 ELOCP10-201ENST00000440624 327 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 PHBP16-201ENST00000446318 950 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 RPL23AP23-201ENST00000452590 471 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 Z95152.1-201ENST00000453556 656 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 METTL15P1-201ENST00000481421 1045 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC025768.1-201ENST00000510057 267 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC010476.1-201ENST00000519111 851 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 OR5BC1P-201ENST00000529327 739 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 UBTFL9-201ENST00000534504 1148 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC015911.5-201ENST00000587076 451 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 ELOCP34-201ENST00000604436 327 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AC025175.1-201ENST00000606482 759 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 AL138721.1-201ENST00000616756 179 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 uc_338.13-201ENST00000618243 179 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 FP325313.1-201ENST00000638228 703 ntBASIC3.83□□□□□ -1.8
SKA3Q8IX90 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA3Q8IX90 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA3Q8IX90 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms