Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC099563.1-201ENST00000456086 418 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RPS15AP1-201ENST00000457423 391 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC053481.1-201ENST00000467217 306 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RPL35AP19-201ENST00000469425 329 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC007688.1-201ENST00000475592 759 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC140172.1-201ENST00000502928 141 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC106799.2-201ENST00000507435 721 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 IGBP1P5-201ENST00000507524 1000 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 CHCHD7-205ENST00000517933 580 ntAPPRIS P1 TSL 4 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC025627.2-201ENST00000576220 160 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 RN7SL657P-201ENST00000582431 293 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC110743.1-201ENST00000584870 478 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AL354984.3-201ENST00000604803 325 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 AC099669.2-201ENST00000616549 437 ntBASIC2.31□□□□□ -2.04
LINC00643Q86TS7 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC2.31□□□□□ -2.04
LINC00643Q86TS7 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC110774.1-201ENST00000623567 2018 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 OR13C1P-202ENST00000641378 2919 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 SNORA60-201ENST00000362396 134 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 SNORA26.7-201ENST00000391288 122 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 SAR1AP2-201ENST00000392696 594 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 HMGB3P18-201ENST00000406327 590 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 DUTP5-201ENST00000406790 469 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 RNU2-5P-201ENST00000410533 180 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL358472.1-201ENST00000431295 329 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 GOT2P5-201ENST00000433995 546 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 OR4C10P-201ENST00000434991 931 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL627308.1-201ENST00000435693 821 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 LINC00328-2P-201ENST00000436585 219 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 YWHAZP2-201ENST00000440317 728 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL157884.3-201ENST00000448273 1184 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 CCRL1P1-201ENST00000449542 1053 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL590639.1-201ENST00000456484 337 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC092691.2-201ENST00000461787 803 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC109327.1-201ENST00000471666 403 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC012181.1-201ENST00000479895 423 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 ADAMTS9-AS2-204ENST00000485174 573 ntTSL 4 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 RPL5P23-201ENST00000496040 868 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC108078.3-201ENST00000502633 489 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 HAUS1P1-201ENST00000505275 832 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 HMGB3P15-201ENST00000507326 574 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC093824.1-201ENST00000508796 343 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 KRT19P6-201ENST00000510983 209 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 MORF4L1P3-201ENST00000525966 950 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC010547.6-201ENST00000571789 193 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC078899.3-201ENST00000599065 212 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC131902.3-201ENST00000611767 581 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 FO681491.1-202ENST00000623392 737 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC073476.4-201ENST00000628409 72 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AL392088.2-201ENST00000637607 285 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 AC108206.1-201ENST00000570186 4159 ntBASIC2.3□□□□□ -2.04
LINC00643Q86TS7 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LINC00643Q86TS7 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LINC00643Q86TS7 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms