Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AMD1P1-201ENST00000457220 922 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 RPS29P22-201ENST00000472363 168 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC109486.1-201ENST00000486833 374 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC007686.1-201ENST00000488511 463 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 RPS4XP20-201ENST00000505751 772 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 PRDX4P1-201ENST00000507189 574 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC114781.4-201ENST00000513707 639 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 RN7SKP147-201ENST00000517154 244 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AP000619.3-201ENST00000535634 1127 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.45□□□□□ -1.54
USP39Q53GS9 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.45□□□□□ -1.54
USP39Q53GS9 ANP32BP3-201ENST00000559213 706 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 VN1R92P-201ENST00000598511 928 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 BNIP3P33-201ENST00000598912 569 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC083899.3-201ENST00000603413 594 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AL137072.1-201ENST00000603444 466 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC091805.2-201ENST00000603848 235 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC112230.1-201ENST00000604342 547 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC018714.1-201ENST00000605028 208 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC005084.1-201ENST00000605160 304 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 MIR6133-201ENST00000617057 108 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC090527.3-201ENST00000619041 548 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC016745.2-201ENST00000608834 3443 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
USP39Q53GS9 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.45□□□□□ -1.54
USP39Q53GS9 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
USP39Q53GS9 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AL137100.1-201ENST00000556703 1620 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.44□□□□□ -1.54
USP39Q53GS9 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.44□□□□□ -1.54
USP39Q53GS9 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.44□□□□□ -1.54
USP39Q53GS9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 snoZ40.1-201ENST00000364540 72 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 SNORA16A-201ENST00000384342 137 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 MTCO3P31-201ENST00000405526 789 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.44□□□□□ -1.54
USP39Q53GS9 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.44□□□□□ -1.54
USP39Q53GS9 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC245052.5-201ENST00000416320 649 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AL354766.1-201ENST00000423396 542 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 RPS27AP6-201ENST00000427962 448 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.44□□□□□ -1.54
USP39Q53GS9 RPL12P17-201ENST00000432393 498 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.44□□□□□ -1.54
USP39Q53GS9 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.44□□□□□ -1.54
USP39Q53GS9 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 HSPE1P22-201ENST00000456856 327 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 RPL7P1-201ENST00000468161 747 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 RPL7P9-201ENST00000468715 747 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 ATP5LP5-201ENST00000483050 299 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC041039.1-201ENST00000485656 536 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC083982.1-201ENST00000485679 344 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 OR11I1P-201ENST00000486033 954 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC104971.1-201ENST00000495117 578 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.44□□□□□ -1.54
USP39Q53GS9 BRD9P1-201ENST00000529855 560 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 OR4A43P-201ENST00000532938 908 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 TPRKBP2-201ENST00000565969 475 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 ABBA01006766.1-201ENST00000584728 294 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC011447.4-201ENST00000587562 111 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC009237.13-201ENST00000603193 276 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.44□□□□□ -1.54
USP39Q53GS9 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC099494.2-201ENST00000623371 978 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms