Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.14□□□□□ -1.75
COL4A4P53420 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A4P53420 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A4P53420 NAMPTP1-201ENST00000440465 2514 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
COL4A4P53420 AL442128.2-201ENST00000620246 1824 ntBASIC4.14□□□□□ -1.75
COL4A4P53420 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A4P53420 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 Y_RNA.500-201ENST00000384466 111 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 MIR93-201ENST00000385024 80 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 ATP5A1P2-201ENST00000412323 255 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 OR4K6P-201ENST00000416478 897 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 TPTE2P3-201ENST00000441562 1189 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 RPL5P30-201ENST00000465511 891 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 UBE2DNL-203ENST00000474922 222 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 AC025627.2-201ENST00000576220 160 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.13□□□□□ -1.75
COL4A4P53420 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.13□□□□□ -1.75
COL4A4P53420 AL137849.1-201ENST00000604767 169 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 AP002001.2-201ENST00000529025 1469 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC083843.3-201ENST00000623679 2186 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC011266.1-201ENST00000624119 3569 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A4P53420 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A4P53420 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL4A4P53420 OR6K3-202ENST00000368146 996 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 OR2X1P-201ENST00000421144 687 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AL158156.1-201ENST00000422509 473 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AL591419.1-201ENST00000427423 339 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 AC092473.1-201ENST00000441098 221 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 RNA5SP154-201ENST00000516193 111 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A4P53420 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A4P53420 AP005205.1-201ENST00000563503 508 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A4P53420 AL133247.2-201ENST00000603236 482 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 AC124312.6-202ENST00000623624 418 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A4P53420 AL392088.2-201ENST00000637607 285 ntBASIC4.13□□□□□ -1.75
COL4A4P53420 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A4P53420 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.12□□□□□ -1.75
COL4A4P53420 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A4P53420 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.12□□□□□ -1.75
COL4A4P53420 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A4P53420 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.12□□□□□ -1.75
COL4A4P53420 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
COL4A4P53420 SNORA3C-201ENST00000408792 125 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A4P53420 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A4P53420 Z74696.2-201ENST00000436514 498 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AL049829.1-201ENST00000465411 156 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 RPS27AP1-201ENST00000475545 471 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 RN7SKP57-201ENST00000517248 293 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AC022695.1-201ENST00000522089 237 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.12□□□□□ -1.75
COL4A4P53420 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 OR5B10P-201ENST00000532869 642 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AC011270.1-201ENST00000558606 583 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.12□□□□□ -1.75
COL4A4P53420 RNU1-30P-201ENST00000606575 163 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AC092354.2-201ENST00000607786 514 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A4P53420 AC006213.5-201ENST00000619673 288 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 MIR6852-201ENST00000621699 66 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 AC119674.1-207ENST00000641355 633 ntBASIC4.12□□□□□ -1.75
COL4A4P53420 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.12□□□□□ -1.75
COL4A4P53420 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A4P53420 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A4P53420 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A4P53420 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A4P53420 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A4P53420 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms