Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 AC009567.2-201ENST00000502989 349 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AC107222.1-201ENST00000510899 637 ntBASIC6.3□□□□□ -1.4
MSX1P28360 LIAS-206ENST00000513731 826 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 AC138517.1-201ENST00000515724 568 ntBASIC6.3□□□□□ -1.4
MSX1P28360 RN7SKP24-201ENST00000515888 284 ntBASIC6.3□□□□□ -1.4
MSX1P28360 RN7SKP219-201ENST00000516825 296 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AC009812.2-201ENST00000517657 457 ntBASIC6.3□□□□□ -1.4
MSX1P28360 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.3□□□□□ -1.4
MSX1P28360 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX1P28360 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 NRBF2P4-201ENST00000520874 850 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AP000676.2-201ENST00000529711 301 ntBASIC6.3□□□□□ -1.4
MSX1P28360 IMMP1LP2-201ENST00000552954 492 ntBASIC6.3□□□□□ -1.4
MSX1P28360 FXNP1-201ENST00000555153 337 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX1P28360 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 SNORA70D-201ENST00000578836 135 ntBASIC6.3□□□□□ -1.4
MSX1P28360 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 AC022893.3-201ENST00000607665 437 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AC133104.2-201ENST00000615272 193 ntBASIC6.3□□□□□ -1.4
MSX1P28360 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX1P28360 AL049641.1-201ENST00000441055 1948 ntBASIC6.29□□□□□ -1.4
MSX1P28360 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.29□□□□□ -1.4
MSX1P28360 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 Y_RNA.257-201ENST00000364596 102 ntBASIC6.29□□□□□ -1.4
MSX1P28360 RNU6-1026P-201ENST00000384465 108 ntBASIC6.29□□□□□ -1.4
MSX1P28360 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 RNU6-316P-201ENST00000391027 107 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC006509.1-201ENST00000420788 634 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC008753.1-201ENST00000423096 284 ntBASIC6.29□□□□□ -1.4
MSX1P28360 PTPN2P1-201ENST00000423212 1072 ntBASIC6.29□□□□□ -1.4
MSX1P28360 CHIAP3-201ENST00000423668 1133 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX1P28360 AC096644.2-201ENST00000429278 159 ntBASIC6.29□□□□□ -1.4
MSX1P28360 HMGB3P11-201ENST00000440127 604 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.29□□□□□ -1.4
MSX1P28360 RPS24P13-201ENST00000442520 397 ntBASIC6.29□□□□□ -1.4
MSX1P28360 PRPS1P1-201ENST00000445305 876 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AL034369.1-201ENST00000453808 477 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC104308.1-201ENST00000454621 333 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX1P28360 RN7SL393P-201ENST00000463588 296 ntBASIC6.29□□□□□ -1.4
MSX1P28360 RPL23AP11-201ENST00000475260 469 ntBASIC6.29□□□□□ -1.4
MSX1P28360 RPL23AP41-201ENST00000484754 458 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AK3P4-201ENST00000504283 583 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 SNORA25.10-201ENST00000515926 124 ntBASIC6.29□□□□□ -1.4
MSX1P28360 RNU6-273P-201ENST00000516937 96 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX1P28360 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 AC027544.3-201ENST00000535082 757 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC6.29□□□□□ -1.4
MSX1P28360 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX1P28360 AL591767.3-201ENST00000554632 525 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX1P28360 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.29□□□□□ -1.4
MSX1P28360 LARP7P2-201ENST00000575306 125 ntBASIC6.29□□□□□ -1.4
MSX1P28360 MIR3146-201ENST00000580367 79 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC105224.1-201ENST00000587055 421 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX1P28360 AC008687.2-201ENST00000597865 520 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AL592436.1-201ENST00000605135 558 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC091768.1-201ENST00000609258 930 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AL352984.2-201ENST00000611153 546 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 AL157817.1-201ENST00000614264 790 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC004696.1-201ENST00000614345 607 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AL162373.1-201ENST00000620433 407 ntBASIC6.29□□□□□ -1.4
MSX1P28360 AC034229.6-201ENST00000623704 224 ntBASIC6.29□□□□□ -1.4
MSX1P28360 NAA50-211ENST00000630058 177 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 ATM-230ENST00000640388 578 ntTSL 5 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms