Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS39Q96JC1 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 RNA5SP391-201ENST00000363456 119 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 SNORD113.2-201ENST00000364166 89 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 RNU6-98P-201ENST00000384173 107 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 HMGB1P13-201ENST00000406019 642 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 SNRPFP1-201ENST00000414761 252 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 RBMY1KP-201ENST00000423480 476 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 AL732292.1-201ENST00000426692 226 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 RSL24D1P8-201ENST00000434442 492 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 FTH1P16-201ENST00000435241 552 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 MTND2P3-201ENST00000452458 470 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 SNRPGP5-201ENST00000456003 220 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 AC007424.1-203ENST00000554613 687 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AC124068.1-201ENST00000563131 678 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 AL031666.3-201ENST00000609320 1006 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AC100827.5-201ENST00000615883 426 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AC019278.1-201ENST00000623516 479 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 AL049536.1-201ENST00000625043 744 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 ATE1-AS1-202ENST00000636460 506 ntBASIC4.37□□□□□ -1.71
VPS39Q96JC1 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS39Q96JC1 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS39Q96JC1 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 ERCC6-202ENST00000374127 1782 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 RNA5SP502-201ENST00000362694 119 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 SNORA70F-201ENST00000384142 135 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 MIR142-201ENST00000384835 87 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 MIR153-1-201ENST00000384914 90 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 MIR3065-201ENST00000390137 79 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 RNU2-65P-201ENST00000410162 185 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 TCEA1P4-201ENST00000415066 844 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 RBMY2KP-201ENST00000418221 992 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 UQCRBP1-201ENST00000421129 336 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 RPL7P29-201ENST00000437151 728 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 HLA-N-201ENST00000437516 135 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 RPL7P33-201ENST00000444159 742 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AL513343.1-201ENST00000451818 792 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC090071.1-201ENST00000507713 644 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 VWA8P1-201ENST00000510889 176 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC006499.6-201ENST00000511169 607 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 Vault.1-201ENST00000516474 102 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 IGHV3-32-201ENST00000519182 355 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 COX6B1P6-201ENST00000522347 255 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 AL352979.3-201ENST00000553515 247 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 CYP4A43P-201ENST00000568156 121 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 MIR4443-201ENST00000585052 53 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AP001160.4-201ENST00000596971 382 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 KATNBL1P1-201ENST00000605192 748 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AL118556.2-201ENST00000614375 824 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 SNX18P1Y-201ENST00000616231 511 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 C2orf27A-204ENST00000623058 969 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AL118508.4-201ENST00000624142 1176 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms