Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MTCO2P2-201ENST00000591258 225 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AP001160.4-201ENST00000596971 382 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 RPL12P25-202ENST00000598100 674 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC010200.2-201ENST00000605098 235 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC023509.5-201ENST00000617434 807 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 ZYXP1-201ENST00000617638 118 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC092608.3-201ENST00000625017 386 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC008993.2-201ENST00000631744 806 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC046144.1-201ENST00000478559 1853 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 A2MP1-204ENST00000566278 4130 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL034370.1-201ENST00000397254 1590 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC104446.1-201ENST00000613728 1321 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 RNA5SP387-201ENST00000364226 106 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 MIR129-1-201ENST00000384972 72 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 MIR525-201ENST00000384978 85 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 MCTS2P-201ENST00000394552 546 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 RNU2-6P-201ENST00000411404 190 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 TAF13P2-201ENST00000416876 286 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC099336.2-201ENST00000422457 254 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 OR2AH1P-201ENST00000425717 928 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 RPL12P28-201ENST00000430852 489 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 ELOCP10-201ENST00000440624 327 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC099063.2-201ENST00000446360 662 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AL031584.1-201ENST00000447169 754 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AL009048.1-201ENST00000450437 298 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 DNAJC19P8-201ENST00000452887 259 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC002553.2-201ENST00000453217 340 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC099560.2-201ENST00000457554 255 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 RPL23AP37-201ENST00000479658 549 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 NIP7P2-201ENST00000485801 544 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC091860.1-201ENST00000505723 432 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 RFPL4AP5-201ENST00000514977 504 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 CYCSP29-201ENST00000533731 318 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 MTND4LP24-201ENST00000572277 291 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 MTCO1P40-201ENST00000574371 625 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 BNIP3P38-201ENST00000601117 544 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC098935.2-201ENST00000604222 466 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 ELOCP34-201ENST00000604436 327 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC013244.3-201ENST00000605614 388 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 AC090506.2-201ENST00000624521 419 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 CDRT1-208ENST00000630868 794 ntBASIC4.73□□□□□ -1.65
COL28A1Q2UY09 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.73□□□□□ -1.65
COL28A1Q2UY09 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 ATP5F1P3-201ENST00000397213 657 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 RNA5SP44-201ENST00000410446 133 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 RPL12P9-201ENST00000412942 488 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AL358176.3-201ENST00000420757 454 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 MTCYBP15-201ENST00000433123 1127 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 GTF2IP3-201ENST00000433887 494 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC092013.1-201ENST00000438795 332 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 CBX1P1-201ENST00000440184 427 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 RPS7P5-201ENST00000441482 581 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms