Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RPL6P9-201ENST00000466502 859 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 RN7SL271P-201ENST00000487601 295 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 SNORA70.17-201ENST00000516449 133 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.99□□□□□ -1.61
COL18A1P39060 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.99□□□□□ -1.61
COL18A1P39060 AC079880.2-201ENST00000603790 1213 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.99□□□□□ -1.61
COL18A1P39060 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
COL18A1P39060 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 NAMPTP1-201ENST00000440465 2514 ntBASIC4.99□□□□□ -1.61
COL18A1P39060 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.99□□□□□ -1.61
COL18A1P39060 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
COL18A1P39060 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.99□□□□□ -1.61
COL18A1P39060 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.99□□□□□ -1.61
COL18A1P39060 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL18A1P39060 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
COL18A1P39060 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.98□□□□□ -1.61
COL18A1P39060 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.98□□□□□ -1.61
COL18A1P39060 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.98□□□□□ -1.61
COL18A1P39060 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 CBX1P3-201ENST00000413296 527 ntBASIC4.98□□□□□ -1.61
COL18A1P39060 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 AC011742.1-201ENST00000431448 434 ntBASIC4.98□□□□□ -1.61
COL18A1P39060 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.98□□□□□ -1.61
COL18A1P39060 AC098799.1-201ENST00000504752 800 ntBASIC4.98□□□□□ -1.61
COL18A1P39060 AC026784.1-201ENST00000507986 352 ntBASIC4.98□□□□□ -1.61
COL18A1P39060 RN7SKP57-201ENST00000517248 293 ntBASIC4.98□□□□□ -1.61
COL18A1P39060 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.98□□□□□ -1.61
COL18A1P39060 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.98□□□□□ -1.61
COL18A1P39060 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.98□□□□□ -1.61
COL18A1P39060 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
COL18A1P39060 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL18A1P39060 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL18A1P39060 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.97□□□□□ -1.61
COL18A1P39060 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.97□□□□□ -1.61
COL18A1P39060 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL18A1P39060 AL122016.1-201ENST00000403365 367 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.97□□□□□ -1.61
COL18A1P39060 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.97□□□□□ -1.61
COL18A1P39060 AC017083.1-201ENST00000428093 483 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 ARL4AP3-201ENST00000441452 574 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 OR52Y1P-201ENST00000452418 828 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 OR4A12P-201ENST00000530847 918 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.97□□□□□ -1.61
COL18A1P39060 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.97□□□□□ -1.61
COL18A1P39060 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.97□□□□□ -1.61
COL18A1P39060 AC133552.5-201ENST00000604266 540 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 MIR8057-201ENST00000620957 69 ntBASIC4.97□□□□□ -1.61
COL18A1P39060 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.97□□□□□ -1.61
COL18A1P39060 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.97□□□□□ -1.61
COL18A1P39060 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL18A1P39060 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL18A1P39060 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
COL18A1P39060 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
COL18A1P39060 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.96□□□□□ -1.61
COL18A1P39060 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.96□□□□□ -1.61
COL18A1P39060 AC005326.1-201ENST00000429197 123 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 AC097713.2-201ENST00000430199 356 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 OR6C71P-201ENST00000432580 913 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 MAPRE1P3-201ENST00000435438 796 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 SNORA71B-202ENST00000439232 272 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 RBMY2UP-201ENST00000453474 324 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 AC090589.1-201ENST00000473109 362 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 RPS29P2-201ENST00000479278 136 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.96□□□□□ -1.61
COL18A1P39060 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.96□□□□□ -1.61
COL18A1P39060 AC024023.1-201ENST00000624530 922 ntBASIC4.96□□□□□ -1.61
COL18A1P39060 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL18A1P39060 AP001642.1-201ENST00000624727 2117 ntBASIC4.96□□□□□ -1.62
COL18A1P39060 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
COL18A1P39060 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL18A1P39060 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL18A1P39060 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL18A1P39060 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.96□□□□□ -1.62
COL18A1P39060 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.96□□□□□ -1.62
COL18A1P39060 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.96□□□□□ -1.62
COL18A1P39060 AL645931.1-201ENST00000439737 410 ntBASIC4.96□□□□□ -1.62
COL18A1P39060 AL049873.1-201ENST00000480540 376 ntBASIC4.96□□□□□ -1.62
COL18A1P39060 IGKV2-38-201ENST00000517443 247 ntBASIC4.96□□□□□ -1.62
COL18A1P39060 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.96□□□□□ -1.62
COL18A1P39060 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
COL18A1P39060 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.96□□□□□ -1.62
COL18A1P39060 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.96□□□□□ -1.62
COL18A1P39060 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.96□□□□□ -1.62
COL18A1P39060 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.96□□□□□ -1.62
COL18A1P39060 MFSD8-236ENST00000641509 4050 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms