Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Gm13168-201ENSMUST00000121771 632 ntBASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Copb1Q9JIF7 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Copb1Q9JIF7 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Copb1Q9JIF7 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Copb1Q9JIF7 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Copb1Q9JIF7 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Copb1Q9JIF7 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Copb1Q9JIF7 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Copb1Q9JIF7 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Copb1Q9JIF7 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.14■□□□□ 0.49
Copb1Q9JIF7 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Copb1Q9JIF7 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Gm3375-201ENSMUST00000203929 796 ntBASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Copb1Q9JIF7 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms