Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trim54Q9ERP3 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.92■□□□□ 0.46
Trim54Q9ERP3 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim54Q9ERP3 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim54Q9ERP3 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.89■□□□□ 0.46
Trim54Q9ERP3 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Trim54Q9ERP3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Gm13884-201ENSMUST00000118103 829 ntBASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Gm11452-201ENSMUST00000122376 690 ntBASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Mir8098-201ENSMUST00000184011 137 ntBASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim54Q9ERP3 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms