Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Gm26039-201ENSMUST00000158152 144 ntBASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Gm44450-201ENSMUST00000199528 114 ntBASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.42■□□□□ 0.38
Ddx56Q9D0R4 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ddx56Q9D0R4 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ddx56Q9D0R4 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Gm11336-201ENSMUST00000118168 334 ntBASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms