Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Gm16061-201ENSMUST00000122167 857 ntBASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smc1aQ9CU62 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Gm13216-201ENSMUST00000117145 591 ntBASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smc1aQ9CU62 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smc1aQ9CU62 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gm25016-201ENSMUST00000158399 131 ntBASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smc1aQ9CU62 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Gm10418-201ENSMUST00000100943 576 ntBASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smc1aQ9CU62 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Gm13474-201ENSMUST00000122466 815 ntBASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms