Protein–RNA interactions for Protein: Q8R550

Sh3kbp1, SH3 domain-containing kinase-binding protein 1, mousemouse

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3kbp1Q8R550 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3kbp1Q8R550 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sh3kbp1Q8R550 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Gm18958-201ENSMUST00000174258 762 ntBASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Gm27000-201ENSMUST00000182943 842 ntBASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Actl10-202ENSMUST00000226583 1501 ntBASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.1■□□□□ 0.33
Sh3kbp1Q8R550 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Gm17971-201ENSMUST00000190239 806 ntBASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sh3kbp1Q8R550 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Sh3kbp1Q8R550 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Gm28033-201ENSMUST00000184224 96 ntBASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sh3kbp1Q8R550 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Gm17807-201ENSMUST00000186869 298 ntBASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3kbp1Q8R550 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms