Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Mir5133-201ENSMUST00000174955 77 ntBASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ccdc28bQ8CEG5 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Gm2559-201ENSMUST00000201323 363 ntBASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc28bQ8CEG5 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc28bQ8CEG5 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Dio3-201ENSMUST00000097228 1449 ntBASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Gm4974-201ENSMUST00000209974 875 ntBASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc28bQ8CEG5 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
Ccdc28bQ8CEG5 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc28bQ8CEG5 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Ccdc28bQ8CEG5 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms