Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Vps53Q8CCB4 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps53Q8CCB4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps53Q8CCB4 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Gm9013-201ENSMUST00000132939 882 ntBASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps53Q8CCB4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC19.28■□□□□ 0.68
Vps53Q8CCB4 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.27■□□□□ 0.68
Vps53Q8CCB4 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Mir1668-201ENSMUST00000184114 107 ntBASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Gm17971-201ENSMUST00000190239 806 ntBASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.27■□□□□ 0.68
Vps53Q8CCB4 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps53Q8CCB4 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps53Q8CCB4 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.26■□□□□ 0.67
Vps53Q8CCB4 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Gm7370-201ENSMUST00000219471 767 ntBASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps53Q8CCB4 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Gm37025-201ENSMUST00000195159 829 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms