Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trub1Q8C0D0 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Gm6433-201ENSMUST00000118634 875 ntBASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trub1Q8C0D0 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.11■□□□□ 0.33
Trub1Q8C0D0 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trub1Q8C0D0 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Gm26039-201ENSMUST00000158152 144 ntBASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trub1Q8C0D0 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Gm11336-201ENSMUST00000118168 334 ntBASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Gm18421-201ENSMUST00000204122 625 ntBASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Trub1Q8C0D0 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trub1Q8C0D0 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.08■□□□□ 0.33
Trub1Q8C0D0 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trub1Q8C0D0 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trub1Q8C0D0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms