Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Ubfd1Q78JW9 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ubfd1Q78JW9 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Ubfd1Q78JW9 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Gm44430-201ENSMUST00000203376 995 ntBASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 AC124569.2-201ENSMUST00000225998 818 ntBASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ubfd1Q78JW9 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ubfd1Q78JW9 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ubfd1Q78JW9 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Gm13312-201ENSMUST00000119631 718 ntBASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Rprl3-201ENSMUST00000157400 290 ntBASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ubfd1Q78JW9 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Gm15372-201ENSMUST00000120729 834 ntBASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Gm12895-201ENSMUST00000122214 226 ntBASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Ubfd1Q78JW9 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms