Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.14■□□□□ 0.49
Cln3Q61124 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Cln3Q61124 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.14■□□□□ 0.49
Cln3Q61124 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC18.14■□□□□ 0.49
Cln3Q61124 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Cln3Q61124 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cln3Q61124 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.13■□□□□ 0.49
Cln3Q61124 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.13■□□□□ 0.49
Cln3Q61124 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.13■□□□□ 0.49
Cln3Q61124 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Gm7230-201ENSMUST00000173026 815 ntBASIC18.13■□□□□ 0.49
Cln3Q61124 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.13■□□□□ 0.49
Cln3Q61124 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.13■□□□□ 0.49
Cln3Q61124 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cln3Q61124 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Cln3Q61124 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.12■□□□□ 0.49
Cln3Q61124 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.12■□□□□ 0.49
Cln3Q61124 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cln3Q61124 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.11■□□□□ 0.49
Cln3Q61124 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC18.11■□□□□ 0.49
Cln3Q61124 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC18.11■□□□□ 0.49
Cln3Q61124 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC18.11■□□□□ 0.49
Cln3Q61124 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC18.11■□□□□ 0.49
Cln3Q61124 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Gm15590-201ENSMUST00000078419 552 ntBASIC18.11■□□□□ 0.49
Cln3Q61124 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Cln3Q61124 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cln3Q61124 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.1■□□□□ 0.49
Cln3Q61124 Gm4459-201ENSMUST00000118750 468 ntBASIC18.1■□□□□ 0.49
Cln3Q61124 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.1■□□□□ 0.49
Cln3Q61124 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Cln3Q61124 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.1■□□□□ 0.49
Cln3Q61124 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Psmb5-202ENSMUST00000227257 622 ntBASIC18.1■□□□□ 0.49
Cln3Q61124 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cln3Q61124 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms