Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3aQ3ULJ3 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Gm12350-201ENSMUST00000121208 462 ntBASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.4■□□□□ 0.38
Upf3aQ3ULJ3 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.39■□□□□ 0.38
Upf3aQ3ULJ3 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Upf3aQ3ULJ3 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gm25745-201ENSMUST00000174945 133 ntBASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Upf3aQ3ULJ3 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms