Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Ccdc166-201ENSMUST00000182172 2584 ntBASIC13.69□□□□□ -0.22
Sdc1P18828 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Sdc1P18828 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC13.69□□□□□ -0.22
Sdc1P18828 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Sdc1P18828 Gm40848-201ENSMUST00000221998 324 ntBASIC13.69□□□□□ -0.22
Sdc1P18828 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Sdc1P18828 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC13.69□□□□□ -0.22
Sdc1P18828 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC13.69□□□□□ -0.22
Sdc1P18828 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Sdc1P18828 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Sdc1P18828 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC13.69□□□□□ -0.22
Sdc1P18828 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Sdc1P18828 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Sdc1P18828 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Gm13401-201ENSMUST00000117074 291 ntBASIC13.68□□□□□ -0.22
Sdc1P18828 Gm15546-201ENSMUST00000122095 826 ntBASIC13.68□□□□□ -0.22
Sdc1P18828 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Sdc1P18828 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC13.68□□□□□ -0.22
Sdc1P18828 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Mir7075-201ENSMUST00000184187 82 ntBASIC13.68□□□□□ -0.22
Sdc1P18828 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC13.68□□□□□ -0.22
Sdc1P18828 AC107711.5-202ENSMUST00000226429 702 ntBASIC13.68□□□□□ -0.22
Sdc1P18828 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sdc1P18828 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sdc1P18828 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC13.67□□□□□ -0.22
Sdc1P18828 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC13.67□□□□□ -0.22
Sdc1P18828 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Sdc1P18828 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC13.67□□□□□ -0.22
Sdc1P18828 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC13.67□□□□□ -0.22
Sdc1P18828 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC13.67□□□□□ -0.22
Sdc1P18828 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Sdc1P18828 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sdc1P18828 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
Sdc1P18828 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Sdc1P18828 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms