Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.59■□□□□ 0.41
TnfP06804 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TnfP06804 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TnfP06804 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.59■□□□□ 0.41
TnfP06804 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TnfP06804 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
TnfP06804 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
TnfP06804 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.58■□□□□ 0.4
TnfP06804 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TnfP06804 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TnfP06804 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TnfP06804 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TnfP06804 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TnfP06804 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TnfP06804 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.57■□□□□ 0.4
TnfP06804 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
TnfP06804 Gm24589-201ENSMUST00000116692 94 ntBASIC17.57■□□□□ 0.4
TnfP06804 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TnfP06804 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.57■□□□□ 0.4
TnfP06804 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
TnfP06804 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TnfP06804 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TnfP06804 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.56■□□□□ 0.4
TnfP06804 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.56■□□□□ 0.4
TnfP06804 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TnfP06804 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TnfP06804 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
TnfP06804 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TnfP06804 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TnfP06804 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.55■□□□□ 0.4
TnfP06804 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
TnfP06804 Gm34391-201ENSMUST00000203706 907 ntBASIC17.55■□□□□ 0.4
TnfP06804 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.55■□□□□ 0.4
TnfP06804 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TnfP06804 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TnfP06804 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TnfP06804 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TnfP06804 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.54■□□□□ 0.4
TnfP06804 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TnfP06804 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TnfP06804 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TnfP06804 Gm13312-201ENSMUST00000119631 718 ntBASIC17.54■□□□□ 0.4
TnfP06804 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.54■□□□□ 0.4
TnfP06804 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TnfP06804 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TnfP06804 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TnfP06804 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.54■□□□□ 0.4
TnfP06804 Birc2-201ENSMUST00000054878 378 ntBASIC17.54■□□□□ 0.4
TnfP06804 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TnfP06804 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms