Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.56■□□□□ 0.24
Col6a3E9PWQ3 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col6a3E9PWQ3 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
Col6a3E9PWQ3 Gm43545-201ENSMUST00000196765 2779 ntBASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Gm27301-201ENSMUST00000184012 127 ntBASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 AY702102-202ENSMUST00000194651 1173 ntBASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col6a3E9PWQ3 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Gm14928-201ENSMUST00000120198 477 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Gm43125-201ENSMUST00000201724 730 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Gm15427-201ENSMUST00000117288 531 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Gm29707-201ENSMUST00000196325 491 ntBASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col6a3E9PWQ3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col6a3E9PWQ3 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col6a3E9PWQ3 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col6a3E9PWQ3 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col6a3E9PWQ3 Idnk-204ENSMUST00000226010 1898 ntBASIC16.52■□□□□ 0.23
Col6a3E9PWQ3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
Col6a3E9PWQ3 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col6a3E9PWQ3 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.5■□□□□ 0.23
Col6a3E9PWQ3 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col6a3E9PWQ3 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col6a3E9PWQ3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col6a3E9PWQ3 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms