Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 OR5AQ1P-202ENST00000641257 1534 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.82□□□□□ -1.64
BRCA1P38398 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC4.81□□□□□ -1.64
BRCA1P38398 MIR1289-1-201ENST00000408836 144 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.81□□□□□ -1.64
BRCA1P38398 AL161631.1-201ENST00000417933 486 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 NAP1L4P3-201ENST00000432820 1147 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.81□□□□□ -1.64
BRCA1P38398 HMGB3P16-201ENST00000508037 287 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC021733.2-201ENST00000518830 497 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.81□□□□□ -1.64
BRCA1P38398 HMGN2P47-201ENST00000559378 272 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.81□□□□□ -1.64
BRCA1P38398 MIR3936-201ENST00000584304 110 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 MIR7702-201ENST00000621931 59 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC244258.1-201ENST00000637553 1071 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.81□□□□□ -1.64
BRCA1P38398 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.81□□□□□ -1.64
BRCA1P38398 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 EOGT-210ENST00000615922 1931 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
BRCA1P38398 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 SOD2P1-201ENST00000396543 562 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 SNORA3.3-201ENST00000408712 125 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 RPS17P13-201ENST00000448974 407 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.81□□□□□ -1.64
BRCA1P38398 RPL23AP94-201ENST00000512518 302 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.81□□□□□ -1.64
BRCA1P38398 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.81□□□□□ -1.64
BRCA1P38398 AC104662.1-201ENST00000604448 511 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC015871.5-202ENST00000623252 701 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BRCA1P38398 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC4.81□□□□□ -1.64
BRCA1P38398 AC116158.1-201ENST00000560231 2129 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 AC097461.1-201ENST00000568928 2821 ntBASIC4.81□□□□□ -1.64
BRCA1P38398 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
BRCA1P38398 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.8□□□□□ -1.64
BRCA1P38398 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BRCA1P38398 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
BRCA1P38398 SNORA48.2-201ENST00000390926 124 ntBASIC4.8□□□□□ -1.64
BRCA1P38398 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.8□□□□□ -1.64
BRCA1P38398 AL591419.1-201ENST00000427423 339 ntBASIC4.8□□□□□ -1.64
BRCA1P38398 UBE2V2P4-201ENST00000447495 259 ntBASIC4.8□□□□□ -1.64
BRCA1P38398 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
BRCA1P38398 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.8□□□□□ -1.64
BRCA1P38398 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.8□□□□□ -1.64
BRCA1P38398 RNU6-1334P-201ENST00000516032 105 ntBASIC4.8□□□□□ -1.64
BRCA1P38398 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.8□□□□□ -1.64
BRCA1P38398 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.8□□□□□ -1.64
BRCA1P38398 AC079880.2-201ENST00000603790 1213 ntBASIC4.8□□□□□ -1.64
BRCA1P38398 AC140113.4-201ENST00000622087 222 ntBASIC4.8□□□□□ -1.64
BRCA1P38398 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC4.8□□□□□ -1.64
BRCA1P38398 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BRCA1P38398 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BRCA1P38398 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.8□□□□□ -1.64
BRCA1P38398 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
BRCA1P38398 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.8□□□□□ -1.64
BRCA1P38398 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRCA1P38398 RNU6-1279P-201ENST00000383917 103 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 Y_RNA.500-201ENST00000384466 111 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 RPL12P18-201ENST00000437175 325 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC127537.2-201ENST00000439258 465 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 GTF3AP5-201ENST00000442645 697 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BRCA1P38398 MTND6P6-201ENST00000478031 263 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.79□□□□□ -1.64
BRCA1P38398 AC008126.1-201ENST00000549019 480 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AL353684.1-201ENST00000622677 1120 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
BRCA1P38398 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
BRCA1P38398 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRCA1P38398 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
BRCA1P38398 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRCA1P38398 AL031121.1-201ENST00000406553 254 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 MTND2P15-201ENST00000418575 892 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AL512649.1-201ENST00000428997 581 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 Z74696.2-201ENST00000436514 498 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AL591363.1-201ENST00000450091 483 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.79□□□□□ -1.64
BRCA1P38398 RPL23AP12-201ENST00000467573 473 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC017015.1-201ENST00000477387 286 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC138409.2-202ENST00000507274 458 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.79□□□□□ -1.64
BRCA1P38398 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.79□□□□□ -1.64
BRCA1P38398 PHBP17-201ENST00000528576 541 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BRCA1P38398 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.79□□□□□ -1.64
BRCA1P38398 AC022968.1-201ENST00000567372 442 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.79□□□□□ -1.64
BRCA1P38398 AC115621.1-201ENST00000604653 858 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 AC015722.2-201ENST00000622210 551 ntBASIC4.79□□□□□ -1.64
BRCA1P38398 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.79□□□□□ -1.64
BRCA1P38398 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms