Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
COL5A1P20908 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL5A1P20908 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
COL5A1P20908 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
COL5A1P20908 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL5A1P20908 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.91□□□□□ -1.78
COL5A1P20908 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.91□□□□□ -1.78
COL5A1P20908 AC115115.1-201ENST00000449927 248 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 AC098799.1-201ENST00000504752 800 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.91□□□□□ -1.78
COL5A1P20908 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.91□□□□□ -1.78
COL5A1P20908 AC008694.2-201ENST00000517591 306 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 IGLV3-26-201ENST00000520756 302 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 UBTFL9-201ENST00000534504 1148 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.91□□□□□ -1.78
COL5A1P20908 U6.105-201ENST00000637379 88 ntBASIC3.91□□□□□ -1.78
COL5A1P20908 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A1P20908 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A1P20908 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.9□□□□□ -1.78
COL5A1P20908 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A1P20908 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
COL5A1P20908 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A1P20908 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A1P20908 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
COL5A1P20908 RBMY1KP-201ENST00000423480 476 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.9□□□□□ -1.79
COL5A1P20908 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.9□□□□□ -1.79
COL5A1P20908 OR9M1P-201ENST00000459641 921 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 AC018635.1-201ENST00000468292 1030 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.9□□□□□ -1.79
COL5A1P20908 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.9□□□□□ -1.79
COL5A1P20908 AC024224.1-201ENST00000538284 609 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 AC090312.1-201ENST00000580637 348 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 AC107993.1-201ENST00000591343 684 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.9□□□□□ -1.79
COL5A1P20908 AC005000.2-201ENST00000605468 310 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 AP005264.7-201ENST00000625003 745 ntBASIC3.9□□□□□ -1.79
COL5A1P20908 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.9□□□□□ -1.79
COL5A1P20908 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.9□□□□□ -1.79
COL5A1P20908 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.9□□□□□ -1.79
COL5A1P20908 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC3.9□□□□□ -1.79
COL5A1P20908 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
COL5A1P20908 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A1P20908 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A1P20908 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
COL5A1P20908 RPL21P17-201ENST00000397467 475 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 AL161631.1-201ENST00000417933 486 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.89□□□□□ -1.79
COL5A1P20908 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.89□□□□□ -1.79
COL5A1P20908 RPL7P4-203ENST00000430239 730 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 RPS26P28-201ENST00000470806 348 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 RN7SL323P-201ENST00000494712 295 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 RNA5SP179-201ENST00000517284 121 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.89□□□□□ -1.79
COL5A1P20908 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.89□□□□□ -1.79
COL5A1P20908 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.89□□□□□ -1.79
COL5A1P20908 AC027176.2-201ENST00000559166 746 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
COL5A1P20908 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 MIR432-201ENST00000606207 94 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A1P20908 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A1P20908 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
COL5A1P20908 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A1P20908 AL355596.1-201ENST00000565399 3996 ntBASIC3.89□□□□□ -1.79
COL5A1P20908 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
COL5A1P20908 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
COL5A1P20908 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A1P20908 ATP5F1P4-201ENST00000397288 746 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AL122016.1-201ENST00000403365 367 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.88□□□□□ -1.79
COL5A1P20908 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.88□□□□□ -1.79
COL5A1P20908 RPL6P9-201ENST00000466502 859 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.88□□□□□ -1.79
COL5A1P20908 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.88□□□□□ -1.79
COL5A1P20908 DUX4L52-201ENST00000549363 777 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.88□□□□□ -1.79
COL5A1P20908 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC3.88□□□□□ -1.79
COL5A1P20908 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.88□□□□□ -1.79
COL5A1P20908 MIR6868-201ENST00000611215 58 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A1P20908 AF001550.2-201ENST00000636643 217 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms