Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGA1P17096 REREP1Y-201ENST00000422655 198 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 AL139247.1-201ENST00000422768 325 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 AL591419.1-201ENST00000427423 339 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.05□□□□□ -1.76
HMGA1P17096 REREP2Y-201ENST00000439103 200 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGA1P17096 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HMGA1P17096 AL358232.1-201ENST00000448030 501 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 AL157884.3-201ENST00000448273 1184 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGA1P17096 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGA1P17096 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGA1P17096 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGA1P17096 AL133162.1-201ENST00000463228 453 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGA1P17096 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGA1P17096 RPL7P24-201ENST00000493052 752 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGA1P17096 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGA1P17096 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGA1P17096 AC016839.1-201ENST00000578162 867 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGA1P17096 AL669942.2-201ENST00000620352 697 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HMGA1P17096 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGA1P17096 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGA1P17096 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
HMGA1P17096 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HMGA1P17096 SCN1A-220ENST00000641603 12506 ntBASIC4.05□□□□□ -1.76
HMGA1P17096 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HMGA1P17096 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGA1P17096 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
HMGA1P17096 ZNF285B-201ENST00000561698 1767 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HMGA1P17096 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGA1P17096 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
HMGA1P17096 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HMGA1P17096 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
HMGA1P17096 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.04□□□□□ -1.76
HMGA1P17096 MIR200C-201ENST00000384980 68 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.04□□□□□ -1.76
HMGA1P17096 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.04□□□□□ -1.76
HMGA1P17096 TRGV7-201ENST00000427089 353 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 AC022336.1-201ENST00000475510 337 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HMGA1P17096 RNU1-95P-201ENST00000516357 160 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 RNU1-128P-201ENST00000516704 160 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HMGA1P17096 OR4A12P-201ENST00000530847 918 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 AC084759.1-201ENST00000561168 290 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 AC023389.2-201ENST00000580031 955 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGA1P17096 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGA1P17096 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 AC006484.1-201ENST00000435086 1884 ntBASIC4.04□□□□□ -1.76
HMGA1P17096 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HMGA1P17096 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.04□□□□□ -1.76
HMGA1P17096 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HMGA1P17096 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
HMGA1P17096 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.03□□□□□ -1.76
HMGA1P17096 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.03□□□□□ -1.76
HMGA1P17096 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.03□□□□□ -1.76
HMGA1P17096 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.03□□□□□ -1.76
HMGA1P17096 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.03□□□□□ -1.76
HMGA1P17096 SYF2P2-201ENST00000417620 583 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 MTND2P15-201ENST00000418575 892 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 VN1R25P-201ENST00000443385 738 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HMGA1P17096 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.03□□□□□ -1.76
HMGA1P17096 VN1R40P-201ENST00000455196 941 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 UBDP1-202ENST00000457888 382 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 RPL31P61-201ENST00000496160 376 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 UBE2CP3-201ENST00000502715 450 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 MIR4433B-201ENST00000581329 102 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 AL049634.3-201ENST00000604968 457 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.03□□□□□ -1.76
HMGA1P17096 SNORA51-201ENST00000606420 132 ntBASIC4.03□□□□□ -1.76
HMGA1P17096 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HMGA1P17096 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.02□□□□□ -1.77
HMGA1P17096 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HMGA1P17096 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HMGA1P17096 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HMGA1P17096 SNORA5A-201ENST00000384111 134 ntBASIC4.02□□□□□ -1.77
HMGA1P17096 MIR449B-201ENST00000384995 97 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms