Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A3P25940 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A3P25940 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A3P25940 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.93□□□□□ -1.62
COL5A3P25940 VN1R8P-201ENST00000407739 893 ntBASIC4.93□□□□□ -1.62
COL5A3P25940 AC026427.2-201ENST00000506228 536 ntBASIC4.93□□□□□ -1.62
COL5A3P25940 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A3P25940 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A3P25940 RN7SKP13-201ENST00000515933 244 ntBASIC4.93□□□□□ -1.62
COL5A3P25940 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.93□□□□□ -1.62
COL5A3P25940 AC103968.1-201ENST00000557841 573 ntBASIC4.93□□□□□ -1.62
COL5A3P25940 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A3P25940 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A3P25940 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A3P25940 AP002512.4-202ENST00000641599 4530 ntBASIC4.93□□□□□ -1.62
COL5A3P25940 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
COL5A3P25940 MIR195-201ENST00000385194 87 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 RPS7P15-201ENST00000415804 584 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 MTND2P15-201ENST00000418575 892 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A3P25940 AC007458.1-201ENST00000542812 373 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A3P25940 LSM3P2-201ENST00000551246 273 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A3P25940 ZNF415P1-201ENST00000582279 1166 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A3P25940 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
COL5A3P25940 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A3P25940 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
COL5A3P25940 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.92□□□□□ -1.62
COL5A3P25940 CYCSP4-201ENST00000429682 331 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.92□□□□□ -1.62
COL5A3P25940 UBDP1-202ENST00000457888 382 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 RPS4XP10-201ENST00000465034 731 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 RN7SKP46-201ENST00000515942 234 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A3P25940 RPL21P7-201ENST00000557463 483 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC005972.3-201ENST00000606304 481 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC018816.2-201ENST00000621460 353 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 AC243312.2-201ENST00000623340 601 ntBASIC4.92□□□□□ -1.62
COL5A3P25940 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL5A3P25940 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL5A3P25940 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL5A3P25940 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL5A3P25940 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.91□□□□□ -1.62
COL5A3P25940 RANP8-201ENST00000444720 713 ntBASIC4.91□□□□□ -1.62
COL5A3P25940 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.91□□□□□ -1.62
COL5A3P25940 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.91□□□□□ -1.62
COL5A3P25940 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.91□□□□□ -1.62
COL5A3P25940 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.91□□□□□ -1.62
COL5A3P25940 AC093014.1-201ENST00000548926 724 ntBASIC4.91□□□□□ -1.62
COL5A3P25940 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.91□□□□□ -1.62
COL5A3P25940 SAMMSON-213ENST00000641336 1521 ntBASIC4.91□□□□□ -1.62
COL5A3P25940 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.91□□□□□ -1.62
COL5A3P25940 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL5A3P25940 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.9□□□□□ -1.62
COL5A3P25940 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.9□□□□□ -1.62
COL5A3P25940 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.9□□□□□ -1.62
COL5A3P25940 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
COL5A3P25940 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.9□□□□□ -1.62
COL5A3P25940 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.9□□□□□ -1.62
COL5A3P25940 AL353748.1-201ENST00000440753 474 ntBASIC4.9□□□□□ -1.62
COL5A3P25940 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.9□□□□□ -1.62
COL5A3P25940 RPL23AP12-201ENST00000467573 473 ntBASIC4.9□□□□□ -1.62
COL5A3P25940 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.9□□□□□ -1.62
COL5A3P25940 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.9□□□□□ -1.62
COL5A3P25940 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.9□□□□□ -1.62
COL5A3P25940 AC016839.1-201ENST00000578162 867 ntBASIC4.9□□□□□ -1.62
COL5A3P25940 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.9□□□□□ -1.62
COL5A3P25940 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL5A3P25940 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL5A3P25940 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.63
COL5A3P25940 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL5A3P25940 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.9□□□□□ -1.63
COL5A3P25940 AC004656.1-201ENST00000568479 4951 ntBASIC4.9□□□□□ -1.63
COL5A3P25940 AC097634.1-201ENST00000604491 2467 ntBASIC4.9□□□□□ -1.63
COL5A3P25940 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
COL5A3P25940 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A3P25940 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 MTND5P1-201ENST00000445440 1375 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
COL5A3P25940 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
COL5A3P25940 SNORA3.3-201ENST00000408712 125 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A3P25940 KATNBL1P2-201ENST00000433311 835 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 RPL21P23-201ENST00000446654 460 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 SNORA59A-201ENST00000459326 152 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 AC008694.2-201ENST00000517591 306 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 AC008802.1-201ENST00000519121 791 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 AC022695.1-201ENST00000522089 237 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.89□□□□□ -1.63
COL5A3P25940 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
COL5A3P25940 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.89□□□□□ -1.63
COL5A3P25940 AL031985.2-201ENST00000600955 480 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 BNIP3P19-201ENST00000605397 577 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 SNORD91B-202ENST00000608459 222 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms