Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 AL137100.1-201ENST00000556703 1620 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 INTS6P1-201ENST00000504674 2530 ntBASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
ZNF540Q8NDQ6 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC007685.1-201ENST00000329806 452 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 RN7SKP115-201ENST00000363177 317 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 SNORA70E-201ENST00000384492 135 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 MIR142-201ENST00000384835 87 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 HMGB1P10-201ENST00000395823 563 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL121834.1-202ENST00000404494 277 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC010385.1-201ENST00000412374 256 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 EIF4EP1-201ENST00000422311 642 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL732292.1-201ENST00000426692 226 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL590623.1-201ENST00000427864 105 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL451139.1-201ENST00000434718 346 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 IGHV5-78-201ENST00000450948 295 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC009963.2-201ENST00000453431 138 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 HMGB3P30-201ENST00000457863 606 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC146507.1-201ENST00000468335 354 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 RPS29P22-201ENST00000472363 168 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC092045.1-201ENST00000495716 1231 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC020593.1-201ENST00000507399 299 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 SNORA31.13-201ENST00000516624 135 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC005229.3-201ENST00000603438 323 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC079610.2-201ENST00000604818 690 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC016717.3-201ENST00000624730 554 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 DCAF13P1-201ENST00000495256 1330 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 MTND4P26-201ENST00000415971 1359 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 AC008758.3-201ENST00000507003 1829 ntBASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
ZNF540Q8NDQ6 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC087190.4-201ENST00000574616 8334 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 OR56B2P-201ENST00000317102 954 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RNU1-108P-201ENST00000362556 161 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RNA5SP391-201ENST00000363456 119 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RNA5SP167-201ENST00000365461 116 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 OR2X1P-201ENST00000421144 687 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 Z74021.1-201ENST00000423610 407 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 OR2B7P-201ENST00000429302 934 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC092647.2-201ENST00000452998 253 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RPL5P32-201ENST00000454085 879 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC091685.2-201ENST00000454924 864 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RPL35AP28-201ENST00000459730 331 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RPS20P4-201ENST00000461659 355 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 ATP5G1P3-201ENST00000463301 410 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC087385.1-201ENST00000475062 312 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 HMGN2P25-201ENST00000486956 268 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms