Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC090151.1-201ENST00000520784 730 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC104662.1-201ENST00000604448 511 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC005858.4-201ENST00000623191 700 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC055839.1-201ENST00000634467 498 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 MIR30B-201ENST00000384850 88 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 MIR195-201ENST00000385194 87 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 ATP5F1P4-201ENST00000397288 746 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 AC073335.1-201ENST00000427776 363 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 RPS29P19-201ENST00000479709 171 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 CAB39P1-201ENST00000502277 460 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 RPL21P12-201ENST00000559810 515 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 AC096553.1-201ENST00000605169 829 ntBASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC88AQ3V6T2 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 RNU2-65P-201ENST00000410162 185 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 SKP1P3-201ENST00000429280 487 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 PLGLA-201ENST00000465668 449 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 KRT19P6-201ENST00000510983 209 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 RNA5SP497-201ENST00000516081 97 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 HMGN2P47-201ENST00000559378 272 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AL606490.9-201ENST00000603331 271 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AL391497.1-201ENST00000608671 547 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AL079305.1-201ENST00000623159 3008 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AP001284.1-201ENST00000528393 2118 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 RNA5SP399-201ENST00000364003 117 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 SNORA70.24-201ENST00000517233 118 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 RNA5SP179-201ENST00000517284 121 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 ZNF415P1-201ENST00000582279 1166 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 AC243654.2-201ENST00000612843 443 ntBASIC5.03□□□□□ -1.6
CCDC88AQ3V6T2 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 PTMAP5-201ENST00000393073 333 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 TCEA1P4-201ENST00000415066 844 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 PPIAP15-201ENST00000479662 484 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 RNU1-95P-201ENST00000516357 160 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 RNU1-128P-201ENST00000516704 160 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 AL121890.2-201ENST00000617644 465 ntBASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC88AQ3V6T2 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC88AQ3V6T2 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms