Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RN7SL600P-201ENST00000581811 299 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 MIR5096-201ENST00000583713 70 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AC006116.5-201ENST00000591936 559 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 MRPS35P3-201ENST00000603189 709 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AP003392.5-201ENST00000607857 415 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AC124312.6-202ENST00000623624 418 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.87□□□□□ -1.79
FOXA1P55317 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA1P55317 UBE3AP2-201ENST00000429033 2259 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA1P55317 LINC02471-203ENST00000641941 4752 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA1P55317 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXA1P55317 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXA1P55317 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 OR11H4-201ENST00000315409 1082 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 RNA5SP399-201ENST00000364003 117 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 RPS27AP11-201ENST00000402798 447 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 HMGB3P19-201ENST00000403971 560 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 ZNF603P-201ENST00000405613 487 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 MIR1251-201ENST00000408552 70 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC073136.2-201ENST00000417282 849 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC068287.1-201ENST00000430283 295 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 RPS11P1-201ENST00000451072 473 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXA1P55317 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXA1P55317 AC092691.2-201ENST00000461787 803 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 RN7SL738P-201ENST00000470264 297 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC006463.2-201ENST00000473326 348 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 RN7SL271P-201ENST00000487601 295 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 RPS27AP13-201ENST00000498403 237 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXA1P55317 AC112184.1-201ENST00000505179 312 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 MGST2-204ENST00000506797 634 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXA1P55317 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXA1P55317 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXA1P55317 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXA1P55317 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXA1P55317 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXA1P55317 MIR4277-201ENST00000578298 84 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC110743.1-201ENST00000584870 478 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC068790.5-201ENST00000602741 355 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AL591424.2-201ENST00000617023 128 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AC103858.2-201ENST00000621471 543 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 MIR6810-201ENST00000622701 70 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AL359715.5-201ENST00000623431 443 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
FOXA1P55317 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
FOXA1P55317 IPO8P1-201ENST00000455509 3109 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 AL606537.1-201ENST00000607258 2011 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 AC017007.4-201ENST00000503353 1352 ntBASIC3.86□□□□□ -1.79
FOXA1P55317 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXA1P55317 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXA1P55317 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
FOXA1P55317 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
FOXA1P55317 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC3.85□□□□□ -1.79
FOXA1P55317 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
FOXA1P55317 SNORA60-201ENST00000362396 134 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 ATP5F1P2-201ENST00000398143 760 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 RN7SKP33-201ENST00000410942 340 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 TPT1P2-201ENST00000413105 503 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AC234781.4-201ENST00000419384 244 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 RPS12P5-201ENST00000423449 371 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.85□□□□□ -1.79
FOXA1P55317 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 AL356276.2-201ENST00000435919 558 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.85□□□□□ -1.79
FOXA1P55317 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 EIF2S2P2-201ENST00000447161 982 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 AC009220.1-201ENST00000451614 275 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 RPL38P1-201ENST00000460914 211 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 UQCRHP4-201ENST00000471686 272 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXA1P55317 IGBP1P5-201ENST00000507524 1000 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AC010342.1-201ENST00000514047 877 ntBASIC3.85□□□□□ -1.79
FOXA1P55317 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms