Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 AL645927.2-201ENST00000618350 349 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AC007546.1-201ENST00000619452 559 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 MIR6758-201ENST00000620653 63 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AC019278.1-201ENST00000623516 479 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 ZNF962P-201ENST00000443465 3140 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.89
HLA-DMBP28068 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.28□□□□□ -1.89
HLA-DMBP28068 AL451142.2-201ENST00000429076 2090 ntBASIC3.28□□□□□ -1.89
HLA-DMBP28068 AC025031.4-201ENST00000621248 3271 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC092079.1-201ENST00000558620 1985 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 IQCB2P-201ENST00000401788 1633 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 U3.22-201ENST00000391120 215 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL450992.3-201ENST00000413192 568 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 TMSB10P2-201ENST00000416049 131 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 MTND4LP13-201ENST00000425022 298 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 RWDD4P2-201ENST00000426392 563 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 YWHAEP5-201ENST00000431545 765 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC073143.1-201ENST00000436316 395 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 RPL7P28-201ENST00000437739 740 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 ELOCP3-201ENST00000439303 348 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 CASP3P1-201ENST00000446037 609 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 MORF4L1P4-201ENST00000450245 976 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 EIF4A2P2-201ENST00000455776 1070 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 RN7SL385P-201ENST00000468873 276 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 RWDD4P1-201ENST00000488019 565 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC093267.1-201ENST00000489176 961 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC108145.1-201ENST00000503770 153 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC135001.1-201ENST00000544546 283 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC027176.2-201ENST00000559166 746 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 MIR4697-201ENST00000582977 78 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC008782.1-201ENST00000603386 430 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL356218.2-201ENST00000605264 187 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC090948.2-201ENST00000607363 564 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AC022960.2-201ENST00000616300 666 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL731566.2-201ENST00000618971 317 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 AL035461.2-201ENST00000619201 524 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.27□□□□□ -1.89
HLA-DMBP28068 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 PHKBP1-201ENST00000450951 1951 ntBASIC3.27□□□□□ -1.89
HLA-DMBP28068 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HLA-DMBP28068 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 RAD17P1-201ENST00000418130 2042 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HLA-DMBP28068 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC011155.1-201ENST00000316512 456 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 RNU4-7P-201ENST00000364758 141 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 RNA5SP39-201ENST00000411245 120 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.26□□□□□ -1.89
HLA-DMBP28068 CYP4F29P-201ENST00000420685 446 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC022022.1-201ENST00000430304 178 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC114495.1-201ENST00000441274 436 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 FHP1-201ENST00000442741 703 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 DHFRP3-201ENST00000455595 559 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC105918.1-201ENST00000474399 838 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC106872.2-201ENST00000494303 480 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 IGLVIV-65-201ENST00000517313 360 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 IGKV2D-10-201ENST00000520194 281 ntBASIC3.26□□□□□ -1.89
HLA-DMBP28068 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms