Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL3A1P02461 PTGES3P2-201ENST00000407942 482 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.75□□□□□ -1.49
COL3A1P02461 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL3A1P02461 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.75□□□□□ -1.49
COL3A1P02461 UBTFL3-201ENST00000418934 1024 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.75□□□□□ -1.49
COL3A1P02461 COX6CP15-201ENST00000426313 211 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 TXNL1P1-201ENST00000429528 554 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC5.75□□□□□ -1.49
COL3A1P02461 AC239367.2-201ENST00000447309 705 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.75□□□□□ -1.49
COL3A1P02461 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL3A1P02461 UBTFL6-201ENST00000477929 1024 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
COL3A1P02461 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.75□□□□□ -1.49
COL3A1P02461 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.75□□□□□ -1.49
COL3A1P02461 AL592156.1-201ENST00000508758 304 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AC112198.4-201ENST00000515450 351 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 RNU4-18P-201ENST00000516751 149 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.75□□□□□ -1.49
COL3A1P02461 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 MTATP6P15-201ENST00000527233 835 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL3A1P02461 AC008088.1-201ENST00000580993 280 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AC015911.5-201ENST00000587076 451 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AL022161.1-201ENST00000604390 213 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 PCA3_2.1-201ENST00000612507 409 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 AL078595.3-201ENST00000623815 1166 ntBASIC5.75□□□□□ -1.49
COL3A1P02461 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.75□□□□□ -1.49
COL3A1P02461 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL3A1P02461 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL3A1P02461 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL3A1P02461 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 RNU1-94P-201ENST00000362627 173 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RNA5SP515-201ENST00000364570 118 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 AL589655.1-201ENST00000405398 482 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RNA5SP317-201ENST00000410176 116 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RNA5SP311-201ENST00000411290 116 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 VDAC1P9-201ENST00000412766 841 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.74□□□□□ -1.49
COL3A1P02461 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 UBE2V1P1-201ENST00000430836 445 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 VN1R108P-201ENST00000431580 830 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 MRPL50P1-201ENST00000431951 384 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC5.74□□□□□ -1.49
COL3A1P02461 MTCO3P5-201ENST00000433620 714 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 MTND4P6-201ENST00000438297 472 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 ABCF2P2-201ENST00000450549 296 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.74□□□□□ -1.49
COL3A1P02461 VN1R32P-201ENST00000452234 905 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RNA5SP246-201ENST00000458909 119 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 snoU109.3-201ENST00000459477 145 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RN7SL812P-201ENST00000493791 279 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.74□□□□□ -1.49
COL3A1P02461 AC010374.1-201ENST00000503762 1237 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.74□□□□□ -1.49
COL3A1P02461 SLC25A15P5-201ENST00000508033 253 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RNA5SP315-201ENST00000516340 116 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 SNORD116-30-201ENST00000516468 85 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 RNA5SP312-201ENST00000517068 116 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC5.74□□□□□ -1.49
COL3A1P02461 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.74□□□□□ -1.49
COL3A1P02461 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.74□□□□□ -1.49
COL3A1P02461 AC008966.2-201ENST00000606157 453 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 AC009090.3-201ENST00000616553 565 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.74□□□□□ -1.49
COL3A1P02461 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC5.74□□□□□ -1.49
COL3A1P02461 AL390862.1-201ENST00000635467 1469 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 XKRY2-202ENST00000623874 1581 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 XKRY-202ENST00000624960 1581 ntBASIC5.74□□□□□ -1.49
COL3A1P02461 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL3A1P02461 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.74□□□□□ -1.49
COL3A1P02461 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL3A1P02461 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL3A1P02461 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL3A1P02461 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL3A1P02461 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.73□□□□□ -1.49
COL3A1P02461 RNA5SP36-201ENST00000410197 133 ntBASIC5.73□□□□□ -1.49
COL3A1P02461 AC005005.2-201ENST00000420779 380 ntBASIC5.73□□□□□ -1.49
COL3A1P02461 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC5.73□□□□□ -1.49
COL3A1P02461 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL3A1P02461 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC5.73□□□□□ -1.49
COL3A1P02461 AL356276.2-201ENST00000435919 558 ntBASIC5.73□□□□□ -1.49
COL3A1P02461 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.73□□□□□ -1.49
COL3A1P02461 MTND2P30-201ENST00000456663 382 ntBASIC5.73□□□□□ -1.49
COL3A1P02461 TPTE2P5-203ENST00000458118 728 ntBASIC5.73□□□□□ -1.49
COL3A1P02461 SEPT7P6-201ENST00000469999 1143 ntBASIC5.73□□□□□ -1.49
COL3A1P02461 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
COL3A1P02461 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.73□□□□□ -1.49
COL3A1P02461 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.73□□□□□ -1.49
COL3A1P02461 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms