Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 RPL21P103-201ENST00000479921 488 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 RN7SL244P-201ENST00000493405 297 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 IGBP1P5-201ENST00000507524 1000 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 COX6B1P5-201ENST00000509843 249 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC133963.2-201ENST00000513686 578 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC083923.1-201ENST00000523708 376 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 OR7E128P-201ENST00000532736 1024 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 NMNAT1P1-201ENST00000554095 876 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 MIR4646-201ENST00000580775 63 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VMP1Q96GC9 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AF230666.2-201ENST00000602328 725 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC005191.1-201ENST00000603950 358 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AP005432.2-201ENST00000608162 586 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC105429.2-201ENST00000610567 517 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC091948.2-201ENST00000636510 279 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 AC017007.4-201ENST00000503353 1352 ntBASIC4.74□□□□□ -1.65
VMP1Q96GC9 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
VMP1Q96GC9 ZNF33CP-201ENST00000432492 2030 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC104446.1-201ENST00000613728 1321 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VMP1Q96GC9 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VMP1Q96GC9 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VMP1Q96GC9 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VMP1Q96GC9 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 ENSAP3-201ENST00000312710 333 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 RNA5SP27-201ENST00000363839 119 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 SNORA58B-201ENST00000364259 136 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 RNU6-650P-201ENST00000365658 111 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 SNORA2.3-201ENST00000383920 135 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 VN1R37P-201ENST00000419096 748 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC007394.1-201ENST00000421941 531 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC073310.1-201ENST00000423226 1033 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC006455.6-201ENST00000426192 893 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 RBMY2QP-201ENST00000429799 1147 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 FTH1P6-201ENST00000430768 320 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 CDY14P-201ENST00000431260 1014 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 RPS27P18-201ENST00000431701 247 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 ELOCP3-201ENST00000439303 348 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 CDY12P-201ENST00000440679 1015 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 CDY13P-201ENST00000445813 1015 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 H2AFZP5-201ENST00000446960 382 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 CDY23P-201ENST00000451661 1014 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AL121877.1-201ENST00000453704 622 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 RPL37P6-202ENST00000464216 403 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC020890.1-201ENST00000491837 504 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 RPL23AP73-201ENST00000492507 471 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC012170.1-201ENST00000495139 359 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 OSBPL9P3-201ENST00000534523 595 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC074029.1-201ENST00000552531 1044 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AL442163.2-201ENST00000553912 710 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC027455.1-201ENST00000574104 594 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 RN7SL176P-201ENST00000580352 264 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 MIR4443-201ENST00000585052 53 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AC138907.10-201ENST00000623708 983 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 AL356121.2-201ENST00000624715 780 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 SEC63P2-201ENST00000503863 1939 ntBASIC4.73□□□□□ -1.65
VMP1Q96GC9 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms