Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC011266.1-201ENST00000624119 3569 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC090971.4-201ENST00000560291 1800 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 SNORD74.4-201ENST00000364129 80 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 SNORD113.2-201ENST00000364166 89 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 RNA5SP397-201ENST00000391323 118 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 HSPD1P16-201ENST00000402302 394 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC019050.1-201ENST00000418508 492 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 Z74021.1-201ENST00000423610 407 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 CACYBPP1-201ENST00000438592 684 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC073264.2-201ENST00000448886 166 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 MTND2P25-201ENST00000449028 610 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 MTND5P8-201ENST00000449817 1083 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AL162388.1-201ENST00000450912 352 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC021205.1-201ENST00000468797 348 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 RN7SL354P-201ENST00000469282 294 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC146944.2-203ENST00000502493 354 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 PPBPP1-201ENST00000510807 373 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC139495.1-202ENST00000513164 354 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 RNA5SP497-201ENST00000516081 97 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AP006289.1-201ENST00000538089 277 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC116651.1-201ENST00000609724 556 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 IQCB2P-201ENST00000401788 1633 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.01□□□□□ -1.77
SKA3Q8IX90 AC073429.2-201ENST00000569694 1444 ntBASIC4.01□□□□□ -1.77
SKA3Q8IX90 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4□□□□□ -1.77
SKA3Q8IX90 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4□□□□□ -1.77
SKA3Q8IX90 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 SPATA2P1-201ENST00000431223 2055 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC079741.1-201ENST00000321498 212 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 SNORA70F-201ENST00000384142 135 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 RNA5SP39-201ENST00000411245 120 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4□□□□□ -1.77
SKA3Q8IX90 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4□□□□□ -1.77
SKA3Q8IX90 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4□□□□□ -1.77
SKA3Q8IX90 AC009302.1-201ENST00000417147 390 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4□□□□□ -1.77
SKA3Q8IX90 YWHAZP2-201ENST00000440317 728 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AL035551.1-201ENST00000446931 348 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4□□□□□ -1.77
SKA3Q8IX90 AL513533.1-201ENST00000453728 415 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC007688.1-201ENST00000475592 759 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4□□□□□ -1.77
SKA3Q8IX90 AC083829.1-201ENST00000503756 657 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4□□□□□ -1.77
SKA3Q8IX90 IGLVIV-53-201ENST00000520107 367 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 ADAD1P2-201ENST00000588476 646 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4□□□□□ -1.77
SKA3Q8IX90 BNIP3P32-201ENST00000600015 554 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 AC068790.7-201ENST00000602347 528 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4□□□□□ -1.77
SKA3Q8IX90 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4□□□□□ -1.77
SKA3Q8IX90 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SKA3Q8IX90 AP001002.1-201ENST00000625148 1513 ntBASIC4□□□□□ -1.77
SKA3Q8IX90 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4□□□□□ -1.77
SKA3Q8IX90 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms